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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TAGTGTATTCGCATATGGGCAAACAAGCAGTGGAAAGACGTACACTATGAGCGGAATTACTGACTGCGCCTTGGTTGATATATATGGCTACATTGACAAGgtaaagaaagcaaacattatccttatatcttactactttacttccgagcccattatgtagttgtgtatttgctttctgcag

Basic information

species Arabidopsis thaliana
transcript AT5G66310.1
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT5G66310.1 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: LOC_Os08g43400.4 (Oryza sativa), 5'ss of exon 3
TAGTGTATTCGCATATGGGCAAACAAGCAGTGGAAAGACGTACACTATGAGCGGAATTACTGACTGCGCCTTGGTTGATATATATGGCTACATTGACAAGgtaaag--aaagcaaacattatccttatatcttactactttacttccgagcccattatgtagttgtgtatttgctttctgcag
 ||  ||||||| |||||||||||||||||||| ||||| ||||| |||| ||| || || || |      |  | || || |||| |||||| || |||||      || |  ||||||    |  | |    || |   | ||      || |    |  ||||||      || || |||
AAGCATATTCGCGTATGGGCAAACAAGCAGTGGCAAGACTTACACGATGACCGGGATAACCGAGTATAGTGTTCTCGACATCTATGACTACATCGAAAAGgtgtgtgcaatgtgaacattgctttactttacctctgcgaaaattt---atccgtc---tcattgtgtgcca--ttgctacag

upper sequence: AT5G66310.1 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: GLYMA01G37340.1 (Glycine max), 5'ss of exon 3
TAGTGTATTCGCATATGGGCAAACAAGCAGTGGAAAGACGTACACTATGAGCGGAATTACTGACTGCGCCTTGGTTGATATATATGGCTACATTGACAAGgtaaagaaagcaaacattatccttatatcttactac-tttacttccgagcccattatgtagttgtgtatttgctttctgcag
 ||  | || |||||||| |||||||||||||| ||||| ||||| ||||| || || ||||| | | |  ||   || || | |  |||||| || ||||||    ||  |   |  ||    |||  ||||    | |   ||  |  || || | |  ||  || ||  ||||    ||
AAGCATTTTTGCATATGGACAAACAAGCAGTGGGAAGACATACACCATGAGTGGCATAACTGAATACACAGTGTCAGACATTTTTAACTACATAGAAAAGgtaggtgaaatacgaac-atgtcaatacattaccttgtctttctcaaaaacctttttttgatttggttttaccttttcatag

upper sequence: AT5G66310.1 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: Vv04s0023g03060.t01 (Vitis vinifera), 5'ss of exon 3
TAGTGTATTCGCATATGGGCAAACAAGCAGTGGAAAGACGTACACTATGAGCGGAATTACTGACTGCGCCTTGGTTGATATATATGGCTACATTGACAAGgtaaagaaagcaa----acattatccttatatcttactact-------ttacttccgagcccatt--atgtagttgtgtatttgctttctgcag
 ||| | || || ||||| |||||||||||||||||||| | ||||||||||||||||||||| |   || |||  |||||||||| | | || || | |||||  ||| ||     | || ||||   |  ||  ||          | | |||| |   | ||  ||| |      | ||     | || ||
AAGTATTTTTGCTTATGGACAAACAAGCAGTGGAAAGACATTCACTATGAGCGGAATTACTGAGTATACCATGGCAGATATATATGACCATATAGAGAGGgtaatcaaaacaccactatatcatcccctttcctctctttcagttccataatttcccatttcctttgatgaaaaaaattgttatacatttgtag