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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTGAACGTCTATTTGGTGCTCTTTCGGCTCATATGTGGCCTGGGATGATTCTGAAATCTGGTGATAGGATAAATGAACCTGTGTTACCTCAAGGGGAAGgttaattgtttcttccactttcctctcccatatatgtatgagttcctgaaatgtcctttcccggttagagtttctgttcgaccaggaagtggtagaccgaaactcgacccagataagaaatcctggtgaggacatttcatttccacttggattcatgttgattgggtcttatatttcctctcag

Basic information

species Arabidopsis thaliana
transcript AT5G65960.1
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT5G65960.1 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: LOC_Os04g49530.1 (Oryza sativa), 5'ss of exon 5
GTTGAACGTCTATTTGGTGCTCTTTCGGCTCATATGTGGCCTGGGATGATTCTGAAATCTGGTGATAGGATAAATGAACCTGTGTTACCTCAAGGGGAAGgttaattgtttcttccactttcctctcccatatatgtatgagttcctgaaatgtcctttcccggttagagtttctgttcgaccaggaagtggtagaccgaaactcgacccagataagaaatcctggtgaggacatttcatttccacttggattcatgttgattgggtcttatatttcctctcag
 | || || ||  |||| || ||||| || || ||||||||||| |||||||||||||||||  | || ||||  |  ||    ||   | |    |||||| | ||    |   |               ||  | |||||||   |||   |  || |   || | |      |  | ||   |  |||  |  |  |       ||  | | || |                                                                 
TTAGAGCGACTCCTTGGAGCCCTTTCTGCACACATGTGGCCTGGAATGATTCTGAAATCTGGAAACAGAATAACCGTTCCATCCTTGGTTGAGAAAGAAGgtgagttaaaccagac--------------cattgggatgagttgacgaaccctgtttactttgtaata----tagagcaacttagg-gtgccatgctaagctgttcccttgctcagta-----------------------------------------------------------------

upper sequence: AT5G65960.1 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: GRMZM2G386125_T01 (Zea mays), 5'ss of exon 9
GTTGAACGTCTATTTGGTGCTCTTTCGGCTCATATGTGGCCTGGGATGATTCTGAAATCTGGTGATAGGATAAATGAACCTGTGTTACCTCAAGGGGAAGgttaattgtttcttccactttcctctcccatatatgtatgagttcctgaaatgtcctttcccggttagagtttctgttcgaccaggaagtggtagaccgaaactcgacccagataagaaatcctggtgaggacatttcatttccacttggattcatgttgattgggtcttatatttcctctcag
 | || || || ||||| |||||||| || |||||||||||||| |||||||||||||||||  | || |||| ||  ||  | ||   | ||    ||||| ||||   | ||  |  |   |       | |   |||| |        |  |||| |    |      || ||    || | |    |  |   |                                                                                      
TTAGAGCGACTCTTTGGAGCTCTTTCTGCACATATGTGGCCTGGAATGATTCTGAAATCTGGAAACAGAATAACTGCCCCATTCTTGGTTGAAAAACAAGgt-aattaagttttataaatgagtaaattg-acaccgatgattgttgatcttaaccttgctttctctacacttttggaaaactatgggacgacatggcatgc----------------------------------------------------------------------------------

upper sequence: AT5G65960.1 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: GRMZM2G700662_T01 (Zea mays), 5'ss of exon 8
GTTGAACGTCTATTTGGTGCTCTTTCGGCTCATATGTGGCCTGGGATGATTCTGAAATCTGGTGATAGGATAAATGAACCTGTGTTACCTCAAGGGGAAGgttaattgtttcttccactttcctctcccatatatgtatgagttcctgaaatgtcctttcccggttagagtttctgttcgaccaggaagtggtagaccgaaactcgacccagataagaaatcctggtgaggacatttcatttccacttggattcatgttgattgggtcttatatttcctctcag
 | || || || ||||| |||||||| || |||||||||||||| |||||||||||||||||  | || |||| ||  ||  | ||   ||||    ||||| | |   ||||   |||          | |  || |||| |        |  |||| |  | |      || ||    || | |    |  |   |                                                                                      
TTAGAGCGACTCTTTGGAGCTCTTTCTGCACATATGTGGCCTGGAATGATTCTGAAATCTGGAAACAGAATAATTGCCCCATTCTTGGTTCAAAAACAAGgtaattaagttctataactgagtaaattgacac-tg-atgattgttgatcttaaccttgcttgctctacacttttggaaaactatgggacgacatggcatgc----------------------------------------------------------------------------------

upper sequence: AT5G65960.1 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: GRMZM2G314386_T02 (Zea mays), 5'ss of exon 6
GTTGAACGTCTATTTGGTGCTCTTTCGGCTCATATGTGGCCTGGGATGATTCTGAAATCTGGTGATAGGATAAATGAACCTGTGTTACCTCAAGGGGAAGgttaattgtttcttccactttcctctcccatatatgtatgagttcctgaaatgtcctttcccggttagagtttctgttcgaccaggaagtggtagaccgaaactcgacccagataagaaatcctggtgaggacatttcatttccacttggattcatgttgattgggtcttatatttcctctcag
 | || || ||  |||| |||||||| || |||||||||||||| |||||||||||||||||  | || |||| ||  ||    ||   | ||    ||||| ||||   |  |  |  |   |          || |||| ||  |||    || |  |   | | |    ||||  | ||  | ||    | |  ||| |    |  |                                                                          
TTAGAGCGACTCCTTGGAGCTCTTTCTGCACATATGTGGCCTGGAATGATTCTGAAATCTGGAAACAGAATAACTGTCCCATCCTTGGTTGAAAAACAAGgt-aattaagttctataaatgagtaaagtggccctg-atga-ttgttga----tcttagcattgcttg---ctctgcactactggaaaactatgggacgacatgacatgc--------------------------------------------------------------------------

upper sequence: AT5G65960.1 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: GLYMA09G32900.1 (Glycine max), 5'ss of exon 5
GTTGAACGTCTATTTGGTGCTCTTTCGGCTCATATGTGGCCTGGGATGATTCTGAAATCTGGTGATAGGATAAATGAACCTGTGTTACCTCAAGGGGAAGgttaattgtttcttccactttcctctcccatatatgtatgagttcctgaaatgtcctttcccggttagagtttctgttcgaccaggaagtggtaga-ccgaaactcgacccagataagaaatcctggtgaggacatttcatttccacttggattcatgttgattgggtcttatatttcctctcag
||||| ||||| |  ||||| ||||| ||||||||||||||||| ||| |  |||||||||| |||||||||||| ||||    || ||| |    ||||||   ||   ||||| | ||||||       |   | |||   || ||   ||   ||  |    |||| |   ||   |  | |    ||||  | ||    | |   ||   | ||                                                                   
GTTGAGCGTCTCTACGGTGCACTTTCTGCTCATATGTGGCCTGGAATGGTATTGAAATCTGGCGATAGGATAAATCAACCATCATTTCCTGAGAAAGAAGgtattttacctcttcaattttccttctttgga---gcatg--ctcttgc--tgcttttgtcaacatagaataagtgcaagtactgattttggtttatccttccccctctccccctcag-------------------------------------------------------------------

upper sequence: AT5G65960.1 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: GLYMA16G21560.1 (Glycine max), 5'ss of exon 5
GTTGAACGTCTATTTGGTGCTCTTTCGGCTCATATGTGGCCTGGGATGATTCTGAAATCTGGTGATAGGATAAATGAACCTGTGTTACCTCAAGGGGAAGgttaattgtttcttccactttcctctcccatatatgtatgagttcctgaaatgtcctttcccggttagagtttctgttcgaccaggaagtggtagaccgaaactcgacccagataagaaatcctggtgaggacatttcatttccacttggattcatgttgattgggtcttatatttcctctcag
||||| ||||| |  ||||| ||||| ||||||||||||||||| ||| |  ||||||||||  ||||||||||| |||     || ||  |    ||||||   || | |||||   ||   | |||              |   || |   | ||     | ||   | || ||| | ||   |||   ||    |  |  | |    |         ||||  |     | |  |    || ||||    ||                             
GTTGAGCGTCTCTACGGTGCACTTTCTGCTCATATGTGGCCTGGAATGGTATTGAAATCTGGCAATAGGATAAATCAACTGTCATTTCCAGAGAAAGAAGgtatcttatctcttct--ttaattttcct-------------tctttggagcatgct-----gattgctgcttttgt-caacatagaataagtg---ctgattttgtttta---------tccttctcctctcctccccccgcc-cttgcccccacaccag-----------------------

upper sequence: AT5G65960.1 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: Vv07s0031g02260.t01 (Vitis vinifera), 5'ss of exon 5
GTTGAACGTCTATTTGGTGCTCTTTCGGCTCATATGTGGCCTGGGATGATTCTGAAATCTGGTGATAGGATAAATGAACCTGTGTTACCTCAAGGGGAAGgttaattgtttcttccactttcctctcccatatatgtatgagttcctgaaatgtcctttcccggttagagtttctgttcgaccaggaagtggtagaccgaaactcgacccagataagaaatcctggtgaggacatttcatttccacttggattcatgttgattgggtcttatatttcctctcag
|||||  |  |  | ||||| ||||| ||||||||||||||||| ||||  |||||||||||||||| |||||  |||||    || ||| ||    ||||||       |      || || ||||   |   ||| |   ||  |    | ||||||  |  ||    | |   |||  | ||  | | |    |      ||    |||                                                                        
GTTGATAGAATCCTGGGTGCACTTTCTGCTCATATGTGGCCTGGAATGACCCTGAAATCTGGTGATAAGATAATGGAACCATCATTGCCTGAAAACCAAGgtt-------ttagatgctatcttctc---tgcctgtcttttttttttttttttccttttactctttagctctacattcagcgagctaattgatttcatctggtctgttcag------------------------------------------------------------------------