Sequence
atgc intronic sequence ATGC exonic sequenceGCTTATGTTCAGCAACTGGAAACAAGCAGGTTGAAGCTAATTCAATTAGAGCAAGAACTCGATCGTGCTAGACAACAGgttaatgaaatgaaatctaaatatatattcgctttctttcgagttccaaaatataatgcaatttctgattgaatatgaatgttttcag
Basic information
species | Arabidopsis thaliana |
transcript | AT5G65210.4 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: AT5G65210.3 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: Vv07s0031g01320.t01 (Vitis vinifera), 5'ss of exon 4
GCTTATGTTCAGCAACTGGAAACAAGCAGGTTGAAGCTAATTCAATTAGAGCAAGAACTCGATCGTGCTAGACAACAGgttaatgaaatgaaatctaaatatatattcgctttctttcgagttccaaaatataatgcaatttctgattgaata-tgaatgttttcag---
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GCCTATGTTCAGGAGTTAGAATCTAGTAGGGTGAAACTGATGCAATTAGAGCAAGAACTCGAGCGTGCTAGACAACAGgtctgggaaatattttccagtgttctatatttctattttctttttccaaaaaggacaaaaaagtctaatcaagcaatgaatgcaaactgcag
upper sequence: AT5G65210.3 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: EFJ29724 (Selaginella moellendorffii), 5'ss of exon 4
GCTTATGTTCAGCAACTGGAAACAAGCAGGTTGAAGCTAATTCAATTAGAGCAAGAACTCGATCGTGCTAGACAACAGgttaatgaaatgaaatctaaatatatattcgctttctttcgagttccaaaatataatgcaatttctgattgaatatgaatgttttcag
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GCTTATGTACAGCAACTGGAATCCAGCAGGGTGAAGCTAAATCAACTCGAGCAAGAGCTGCAACGAGCCAGGCAACAGgtacgct---tatcatttggcttgacgtccgcgttgcgtaagctt----agcataaagacattccatgcgga----ggccttttgcagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|125313417|gb|EL327502.1|EL327502EST: GTTGAAGCTAATTCAATTAGAGCAAGAACTCGATCGTGCTAGACAACAG GGATTCTATGTAGGAAACGGAATAGATACTAATTCTCTCGGTTTTTCGGAA
genomic: GTTGAAGCTAATTCAATTAGAGCAAGAACTCGATCGTGCTAGACAACAGgttaatgaaa ... atgttttcagGGATTCTATGTAGGAAACGGAATAGATACTAATTCTCTCGGTTTTTCGGAA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GCTTATGTTCAGCAACTGGAAACAAGCAGGTTGAAGCTAATTCAATTAGAGCAAGAACTCGATCGTGCTAGACAACAGgttaatgaaatgaaatctaaatatatattcgctttctttcgagttccaaaatataatgcaatttctgattgaatatgaatgttttcag
- - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - AGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - AGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC