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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGTTACATGAAGCAACTGCTGACTGGGCTTCACTATTGTCATGTGAATCAAGTGCTTCACCGTGATATAAAAGgtgaatatatcccaaaatacattgttgaccattttgttctcttgtctttatttgctagttaacctataatatattggtgcag

Basic information

species Arabidopsis thaliana
transcript AT5G64960.2
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT5G64960.2 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: LOC_Os05g32360.1 (Oryza sativa), 5'ss of exon 6
TGTTACATGAAGCAACTGCTGACTGGGCTTCACTATTGTCATGTGAATCAAGTGCTTCACCGTGATATAAAAGgtgaatatatcccaaaatacattg----ttgaccattttgttctc-ttgtctttatttgctagttaacctataatatat-tggtgcag---------------
||||||||||||||||| || || || ||||| ||||||||  | |||||||| || || |||||||| ||||||  | | |  | ||  | | ||     ||   ||| |  |  |  |  |  || | || |  |||  ||| |||||   || | ||                
TGTTACATGAAGCAACTCCTTACAGGCCTTCATTATTGTCACATTAATCAAGTTCTGCATCGTGATATTAAAGgtataca-acactaagcttcgttacattttattcatctcatagtgatcatgattttgtggtttttatgctaaaatattcctgattcaaaatctactcttgcag

upper sequence: AT5G64960.2 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: Vv00s0805g00020.t01 (Vitis vinifera), 5'ss of exon 5
TGTTACATGAAGCAACTGCTGACTGGGCTTCACTATTGTCATGTGAATCAAGTGCTTCACCGTGATATAAAAGgtgaatatatcccaaaatacattgttgaccattttgttctcttgtctttatttgctagttaacctataatatattggtgcag
||||| ||||||||  | ||||||||||||||||| ||||| || |||||||| |||||| | || || ||||                                                                                  
TGTTATATGAAGCAGTTACTGACTGGGCTTCACTACTGTCACGTCAATCAAgtacttcacagggacatcaaag----------------------------------------------------------------------------------

upper sequence: AT5G64960.2 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: Vv07s0141g00280.t01 (Vitis vinifera), 5'ss of exon 6
TGTTACATGAAGCAACTGCTGACTGGGCTTCACTATTGTCATGTGAATCAAGTGCTTCACCGTGATATAAAAGgtgaatat-atcccaaaatacattgttgaccat-tttgttctcttgtctttat--ttgctagttaacctat-aatatat---tggtgcag
||||| ||||||||  | ||||||||||||||||| ||||| || |||||||| |||||| | || || |||||| |  || |     || ||  |  |  |     | || ||  |  | |||     |  |  |  | | || || |  |   |  |||||
TGTTATATGAAGCAGTTACTGACTGGGCTTCACTACTGTCACGTCAATCAAGTACTTCACAGGGACATCAAAGgttatcatcaaattgaattatttcttctattggatctgctccttaatttttgcaactagtgttacatccatgaacacctgtttcttgcag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|164127278|gb|EL997483.1|EL997483
EST:     CTATTGTCATGTGAATCAAGTGCTTCACCGTGATATAAAAG                         GTTCGAATCTACTTATTGACAATGAGGGAAATTTAAAGCTAGCGGATTTTG
genomic: CTATTGTCATGTGAATCAAGTGCTTCACCGTGATATAAAAGgtgaatatat ... attggtgcagGTTCGAATCTACTTATTGACAATGAGGGAAATTTAAAGCTAGCGGATTTTG
EST: gi|86059280|gb|DR355037.1|DR355037
EST:     TGGGCTTCACTATTGTCATGTGAATCAAGTGCTTCACCGTGATATAAAAG                         GTTCGAATCTACTTATTGACAATGAGGGAAATTTAAAGCTAGCGGATTTTG
genomic: TGGGCTTCACTATTGTCATGTGAATCAAGTGCTTCACCGTGATATAAAAGgtgaatatat ... attggtgcagGTTCGAATCTACTTATTGACAATGAGGGAAATTTAAAGCTAGCGGATTTTG
EST: gi|86059279|gb|DR355036.1|DR355036
EST:     TGGGCTTCACTATTGTCATGTGAATCAAGTGCTTCACCGTGATATAAAAG                         GTTCGAATCTACTTATTGACAATGAGGGAAATTTAAAGCTAGCGGATTTTG
genomic: TGGGCTTCACTATTGTCATGTGAATCAAGTGCTTCACCGTGATATAAAAGgtgaatatat ... attggtgcagGTTCGAATCTACTTATTGACAATGAGGGAAATTTAAAGCTAGCGGATTTTG
EST: gi|124812397|gb|EH897263.1|EH897263
EST:     ATGTGAATCAAGTGCTTACACCGTGATATAAAAG                         GTTCGAATCTACTTATTGACAATGAGGGAAATTTAAAGCTAGCGGATTTTG
genomic: ATGTGAATCAAGTGCTT-CACCGTGATATAAAAGgtgaatatat ... attggtgcagGTTCGAATCTACTTATTGACAATGAGGGAAATTTAAAGCTAGCGGATTTTG
EST: gi|124946663|gb|EL022562.1|EL022562
EST:     CTTCACCGTGATATAAAAG                         GTTCGAATCTACTTATTGACAATGAGGGAAATTTAAAGCTAGCGGATTTTG
genomic: CTTCACCGTGATATAAAAGgtgaatatat ... attggtgcagGTTCGAATCTACTTATTGACAATGAGGGAAATTTAAAGCTAGCGGATTTTG
EST: gi|125018561|gb|EL090830.1|EL090830
EST:     TGAATCAAGTGCTTCACCGTGATATAAAAG                         GTTCGAATCTACTTATTGACAATGAGGGAAATTTAAA
genomic: TGAATCAAGTGCTTCACCGTGATATAAAAGgtgaatatat ... attggtgcagGTTCGAATCTACTTATTGACAATGAGGGAAATTTAAA