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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTGGAGACATTTGGTGCTATGGCAAAAACTGAGAAAATTGCTTTCATTCTTGAACAAgtaagactttctgttatcttttcatatttcttaagctttgtgctttgtgctttgttcttgtttgtatgttgtgattctaattattggtgtgtaaacttctgaag

Basic information

species Arabidopsis thaliana
transcript AT5G64760.2
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT5G64760.2 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: GRMZM2G014116_T02 (Zea mays), 5'ss of exon 5
GTGGAGACATTTGGTGCTATGGCAAAAACTGAGAAAATTGCTTTCATTCTTGAACAAgtaagactttctgttatcttttcatatttcttaagctttgtgctttgtgctttgttcttgtttg---tatgtt-gtgattctaattattggtgtgtaaacttctgaag----------------------------------------------------------------
|| || ||||||||  |||||||||| || ||||||||||||||||||||||| || |||    || |     |  |||  ||||| |   | |||  | |      |   ||   |   |    || || | ||    |  || |  | ||  ||| |   | |                                                                
GTTGAAACATTTGGCTCTATGGCAAAGACGGAGAAAATTGCTTTCATTCTTGAGCAGgta----ttccctccgttcttttttatttgtcgcggttta-gttcaaaaatgaattagcgggcgacaaatatttgagaacggaggtagtactatggcaacctactatgttaatacttggtattcttactaaaatgtgtattcatgcaaaacttactattatcgttgtcacag

upper sequence: AT5G64760.2 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: GRMZM2G013750_T03 (Zea mays), 5'ss of exon 5
GTGGAGACATTTGGTGCTATGGCAAAAACTGAGAAAATTGCTTTCATTCTTGAACAAgtaagactttctgttatcttttcatatttcttaagctttgtgctttgtgctttgttcttgtttgtatgttgtgattctaattattggtgtgtaaacttctgaag
|| || ||||||||  | |||||||| || ||||||||||||||||||||||| || ||||       ||  | | | | || ||  |    ||||||  |||          ||| ||   |||      ||   |||||||                  
GTCGAAACATTTGGCTCCATGGCAAAGACGGAGaaaattgctttcattcttgagcaggtaacg-----tgccaacctattatgttaat---actttgtatttttacgaaaaggcttattc--atgcaaaacttactattattg------------------

upper sequence: AT5G64760.2 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: GRMZM2G013750_T04 (Zea mays), 5'ss of exon 5
GTGGAGACATTTGGTGCTATGGCAAAAACTGAGAAAATTGCTTTCATTCTTGAACAAgtaagactttctgttatcttttcatatttcttaagctttgtgctttgtgctttgttcttgtttgtatgttgtgattctaattattggtgtgtaaacttctgaag
|| || ||||||||  | |||||||| || ||||||||||||||||||||||| || ||||       ||  | | | | || ||  |    ||||||  |||          ||| ||   |||      ||   ||||||| |||   |          
GTCGAAACATTTGGCTCCATGGCAAAGACGGAGAAAATTGCTTTCATTCTTGAGCAGgtaacg-----tgccaacctattatgttaat---actttgtatttttacgaaaaggcttattc--atgcaaaacttactattattgttgtcacag---------

upper sequence: AT5G64760.2 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: GLYMA08G15340.1 (Glycine max), 5'ss of exon 5
GTGGAGACATTTGGTGCTATGGCAAAAACTGAGAAAATTGCTTTCATTCTTGAACAAgtaaga---ctttctgttatcttttcatatttcttaagctttgtgctttgtgctttgttcttgtttgtatgttgtgattctaattattggtgtgtaaacttctgaag
||||| ||||| ||||| ||||| || |||||||||||||| |||||||||||||||||| ||    ||| |||  |  | | ||       |      ||   |  |   ||||  |    |  |  |  ||||   |     |    ||| || || |  ||
GTGGAAACATTCGGTGCCATGGCCAAGACTGAGAAAATTGCGTTCATTCTTGAACAAgtatgagatatttttgtgttactgtgatgacagcaatagcaggtcactaatttcttgtgttgcaattcagttgctgatatcagaatcttccatgtcaaattgtatag

upper sequence: AT5G64760.2 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: GLYMA04G39520.1 (Glycine max), 5'ss of exon 5
GTGGAGACATTTGGTGCTATGGCAAAAACTGAGAAAATTGCTTTCATTCTTGAACAAgtaagactttctgttatcttttcatatttcttaagctttgtgctttgtgctttgttcttgtttgtatgttgtgattctaattattggtgtgtaaacttctgaag-------------
||||| || |||||||| ||||| |||||||||||||| || ||||||||||||||||||   ||     || |  |||    || |||||| | ||   ||  |  || |    |  ||  |||||   ||| || ||  || | || |||  |||                 
GTGGAAACTTTTGGTGCCATGGCTAAAACTGAGAAAATCGCATTCATTCTTGAACAAgta---ctaggcattctacttt----ttccttaagttatgacattaattattggccactaatttcatgttacaatt-tagttgctgatttgaaaatctctttcatttaattgtgcag

upper sequence: AT5G64760.2 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: GLYMA06G15330.1 (Glycine max), 5'ss of exon 5
GTGGAGACATTTGGTGCTATGGCAAAAACTGAGAAAATTGCTTTCATTCTTGAACAAgta--agactttctgttatcttttcatatt----tcttaagctttgtgctttgtgctttgttcttgtttgtatgttg-tgattctaattattggtgtgtaaacttctgaag
||||| || ||||| || ||||| |||||||||||||| || ||||||||||||||||||   ||| ||||  | | |  |    |       ||||   |||  |  |    |    | ||| |  |  |||| |||||  ||    |  |   |  | || || ||
GTGGAAACTTTTGGCGCCATGGCTAAAACTGAGAAAATCGCATTCATTCTTGAACAAgtacgggacattctactttttccttgagtaaggacattaattattggccactaatttcatatgttgctatttagttgctgatttgaaaatctctttcatttaattgtgcag

upper sequence: AT5G64760.2 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: GLYMA05G32030.2 (Glycine max), 5'ss of exon 5
GTGGAGACATTTGGTGCTATGGCAAAAACTGAGAAAATTGCTTTCATTCTTGAACAAgtaaga---ctttctgttatcttttcatatttcttaagctttgtgctttgtgctttgttcttgtttgtatgttgtgattctaattattggtgtgtaaacttctgaag
||||| || |||||||| ||||| || |||||||||||||| |||||||| ||||||||| |     ||| |||  |  | | ||       |      |   ||| |   ||||  ||   | ||  |  |||||  |     |    |||  | || || ||
GTGGAAACTTTTGGTGCCATGGCCAAGACTGAGAAAATTGCATTCATTCTCGAACAAgtatgggatatttttgtgttactgtgatgacagcaatagcaggccatttatttcttgtgtttcaatttagttgctgatttcagaatcttccatgtctaattgtgtag

upper sequence: AT5G64760.2 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: Vv07s0031g01970.t01 (Vitis vinifera), 5'ss of exon 5
GTGGAGACATTTGGTGCTATGGCAAAAACTGAGAAAATTGCTTTCATTCTTGAACAAgtaag----actttctgttat----cttttcatatttcttaagctttgtgctttg--tgctttgttc-ttgtttgtatgttgtgattctaattattggtgtgtaaacttctgaag----------------------------------------------
||||| ||||||||||| |||||||||||||| |||||||| |||||||||||||||||| |    |  |||| | ||    ||||| ||   |  ||   ||| | ||||   || | | ||  ||  |||||   | |  |  ||| |  |  | | |     |   |||                                              
GTGGAAACATTTGGTGCAATGGCAAAAACTGAAAAAATTGCATTCATTCTTGAACAAgtacgtgttatcttctttcattgttcttttaattacttctaccatttattcttttattgttcttttaattacttgtaccatttattcgtaacttattttatttttgggttcaaagttgataatgctactttttatgtaataatgttgaaattacttttcag

upper sequence: AT5G64760.2 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: PP1S58_256V6.1 (Physcomitrella patens), 5'ss of exon 5
GTGGAGACATTTGGTGCTATGGCAAAAACTGAGAAAATTGCTTTCATTCTTGAACAAgtaagactttctgttatcttttc---atatttcttaagct---ttgtgctttgtgct----ttgttcttgtttgtatgttgtgattctaattattggt-gtgt-aaacttctgaag---
|||||||| || |||||||||||||| || |||||||||||||||||||| || || |||||    | | ||  |||| |   ||  |   || |||   | ||  || |         ||    | |  || || |    | | ||| |||  |  | | | | |  ||  |   
GTGGAGACCTTCGGTGCTATGGCAAAGACAGAGAAAATTGCTTTCATTCTAGAGCAGgtaaggaaatttcttggctttacgctatgctgtatatgctagctcgtatttaggaacgatactgaagctttcagtttggtactttccgaatcattactcatattagaatgatgttgcag

upper sequence: AT5G64760.2 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: PP1S257_89V6.2 (Physcomitrella patens), 5'ss of exon 5
GTGGAGACATTTGGTGCTATGGCAAAAACTGAGAAAATTGCTTTCATTCTTGAACAAgtaagactttctgttatcttttcatatttcttaagctttgtgctttgtgctttgttc---ttgtttgtatgttgtgattctaattattggtgtgtaaacttctgaag--------------------------------------------
||||| || |||||||| ||||||||||||||||| ||||||||||||||||||||||||||  ||| | |||| ||| ||    | ||   |    | ||||| | || |||    | || | | | |||   ||||     | |   |   || |||| |                                              
GTGGAAACTTTTGGTGCCATGGCAAAAACTGAGAAGATTGCTTTCATTCTTGAACAAgtaaggattttt-ttatatttgcaatcctgttttaccagctactttgcgtttggtttaaatagtatttgtattgaagttcttgagctggcacttcgaagttcttaccgttattttgttagagccagtactgatagtagggtggtgtgccag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86080863|gb|DR376620.1|DR376620
EST:     CATTTGGTGCTATGGCAAAAACTGAGAAAATTGCTTTCATTCTTGAACAA                         GTCCGCTTGTGTTTGGATCAAAAAGATTTTGTCCGTGCACAAATTTTATCT
genomic: CATTTGGTGCTATGGCAAAAACTGAGAAAATTGCTTTCATTCTTGAACAAgtaagacttt ... acttctgaagGTCCGCTTGTGTTTGGATCAAAAAGATTTTGTCCGTGCACAAATTTTATCT