Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CCAACGCAGCAGCAGACACGTTACAGGAAGTCTCCATGTGCTCCATCTGAGGGTGGTGAAGgtaaatatcttcattttatcatctccatcccaaagcaagttacagacttattgatccatcctgttggatctgttattgttacag

Basic information

species Arabidopsis thaliana
transcript AT5G64130.2
intron # 5
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|125278696|gb|EL292781.1|EL292781
EST:     CCATGTGCTCCATCTGAGGGTGGTGAAG                         ATGGAGGAGCTGCTCAGGCCGAGGGAGGTTCAGGCAACTGAGGCGTAGAGA
genomic: CCATGTGCTCCATCTGAGGGTGGTGAAGgtaaatatct ... attgttacagATGGAGGAGCTGCTCAGGCCGAGGGAGGTTCAGGCAACTGAGGCGTAGAGA
EST: gi|47828491|gb|CK118175.1|CK118175
EST:     GCAGACACGTTACAGGAAGTCTCCATGTGCTCCATCTGAGGGTGGTGAAG                         ATGGAGGAGCTGCTCAGGCCGAGGGAGGTTCAGGCAACTGAGGCGTAGAGA
genomic: GCAGACACGTTACAGGAAGTCTCCATGTGCTCCATCTGAGGGTGGTGAAGgtaaatatct ... attgttacagATGGAGGAGCTGCTCAGGCCGAGGGAGGTTCAGGCAACTGAGGCGTAGAGA
EST: gi|164033470|gb|ES126056.1|ES126056
EST:     AGGAAGTCTCCATGTGCTCCATCTGAGGGTGGTGAAG                         ATGGAGGAGCTGCTCAGGCCGAGGGAGGTTCAGGCAACTGAGGCGTA
genomic: AGGAAGTCTCCATGTGCTCCATCTGAGGGTGGTGAAGgtaaatatct ... attgttacagATGGAGGAGCTGCTCAGGCCGAGGGAGGTTCAGGCAACTGAGGCGTA
EST: gi|124789979|gb|EH879658.1|EH879658
EST:     GCAGACACGTTACAGGAAGTCTCCATGTGCTCCATCTGAGGGTGGTGAAG                         ATGGAGGAGCTGCTCAGG
genomic: GCAGACACGTTACAGGAAGTCTCCATGTGCTCCATCTGAGGGTGGTGAAGgtaaatatct ... attgttacagATGGAGGAGCTGCTCAGG
EST: gi|164061271|gb|ES081387.1|ES081387
EST:     AAGTCTCCATGTGCTCCATCTGAGGGTGGTGAAG                         ATGGAGGAGCTGCTCAGGCCGAGGGAGGTTCAGGCAACTGAGGCGTAGAGA
genomic: AAGTCTCCATGTGCTCCATCTGAGGGTGGTGAAGgtaaatatct ... attgttacagATGGAGGAGCTGCTCAGGCCGAGGGAGGTTCAGGCAACTGAGGCGTAGAGA
EST: gi|125139823|gb|EL178390.1|EL178390
EST:     TCCATCTGAGGGTGGTGAAG                         ATGGAGGAGCTGCTCAGGCCGAGGGAGGTTCAGGCAACTGAGGCGTAGAGA
genomic: TCCATCTGAGGGTGGTGAAGgtaaatatct ... attgttacagATGGAGGAGCTGCTCAGGCCGAGGGAGGTTCAGGCAACTGAGGCGTAGAGA
EST: gi|164232337|gb|ES172346.1|ES172346
EST:     GCAGACACGTTACAGGAAGTCTCCATGTGCTCCATCTGAGGGTTGTGAAG                         ATGGAGGAGCTGCTCAGGCCGAGGG
genomic: GCAGACACGTTACAGGAAGTCTCCATGTGCTCCATCTGAGGGTGGTGAAGgtaaatatct ... attgttacagATGGAGGAGCTGCTCAGGCCGAGGG
EST: gi|164019035|gb|ES081774.1|ES081774
EST:     AAGTCTCCATGTGCTCCATCTGAGGGTTGGTGAAG                         ATGGAGGAGCTGCTCAGGCCGAGGGAGGTTCAGGCAACTGAGGCGTAGAG
genomic: AAGTCTCCATGTGCTCCATCTGAGGG-TGGTGAAGgtaaatatct ... attgttacagATGGAGGAGCTGCTCAGGCCGAGGGAGGTTCAGGCAACTGAGGCGTAGAG