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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCAAGGATGTCCTAGCTAAGGCCAAAACAGGAACTGGGAAAACTGTAGCGTTTTTGgtgagacataccatacactaagttggccatttggtaatggattgaacctatatttgggatctgtgcttattgctggtgtttatttttaag

Basic information

species Arabidopsis thaliana
transcript AT5G63630.1
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT5G63630.1 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: GRMZM2G026371_T02 (Zea mays), 5'ss of exon 3
GCAAGGATGTCCTAGCTAAGGCCAAAACAGGAACTGGGAAAACTGTAGCGTTTTTGgtgagacataccatac----actaagttggccatttg--gtaatggattgaacctatatttgggatctgtgcttattgctggtgtttatttttaag----------------------------------------------------------
|||||||||| || || ||||| || ||||||||||||||||| || || ||||||||   || |    | |       |  | |   || ||  || ||     | | ||  |||   |   ||   ||||  || ||   | | | |||                                                           
GCAAGGATGTTCTTGCAAAGGCAAAGACAGGAACTGGGAAAACAGTTGCCTTTTTGgtattacttcttgttcttcagtcacatggttaatctgatgttattaggagcagctgaattattgcagtgaaattat--ctagtcaatttctgtaaaaggaaaaaaacaaaacaaaactatctagtcactatacacgttttgaccattgttacag

upper sequence: AT5G63630.1 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: Vv15s0046g01010.t01 (Vitis vinifera), 5'ss of exon 4
GCAAGGATGTCCTAGCTAAGGCCAAAACAGGAACTGGGAAAACTGTAGCGTTTTTGgtgagacatacca--------tacactaagttggccatttggtaatggattgaacctatatttgggatctgtgcttattgctggtgttta---tttttaag
| |||||||| ||||| || || |||||||| |||||||||||||| || |||||||| | |||    |        ||   |    ||   || ||   ||| | ||||   |   |      | |  |||    ||    ||||   |||| | |
GTAAGGATGTTCTAGCCAAAGCTAAAACAGGCACTGGGAAAACTGTCGCATTTTTGgtaaaacacttaactgttatttatgattgagtgcatatatgcctatg-actgaaggaaagatgatccacagatcttccatctataatttaggattttcatg