Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACACACTAATTTGAAGAGAGTGACTTACCTTGTACTGGATGAGGCTGACAGAATGTTAGACATGGGATTTGAACCCCAAATTAGAAAGATTGTATCTCAGgtatgtttgtactttctccaaagctatcatgtagtgtctttaaggaaagggtggttgaccaacattattagtcgatagattttatcttcccagtttattgttctgttgctaaataagaaccatcacggcttttgttcagaacttgagattgttccttatttttcacag

Basic information

species Arabidopsis thaliana
transcript AT5G63120.1
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT5G63120.1 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: GLYMA05G02590.1 (Glycine max), 5'ss of exon 5
ACACACTAATTTGAAGAGAGTGACTTACCTTGTACTGGATGAGGCTGACAGAATGTTAGACATGGGATTTGAACCCCAAATTAGAAAGATTGTATCTCAGgtatgtttgtactttctccaaagctatcatgtagtgtctttaaggaaagggtggttgaccaacattattagtcgatagattttatcttcccagtttat-tgttctgttgctaaataagaaccatcacggcttttgttcagaacttgagattgttccttatttttcacag
 ||||| ||  ||||||||||||||||||||||  ||||||| |||||  ||||| |||||||||| |||||||| || ||  | || |||||| | ||||||  |||    || |  | || || | |     |     | || |  |||     ||  ||||||   | || ||   ||  || ||   |  |||  ||| ||||||                                                            
GCACACAAACCTGAAGAGAGTGACTTACCTTGTCTTGGATGAAGCTGATCGAATGCTAGACATGGGTTTTGAACCTCAGATACGGAAAATTGTAGCCCAGgtactttt----ttgcaactaacctgtaacaagttagtactgagtagtggggaaaaga--aacattg--aatctat---ttccatttttgaaccttaagtgtgctgttgtc----------------------------------------------------------

upper sequence: AT5G63120.1 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: GLYMA17G09270.1 (Glycine max), 5'ss of exon 5
ACACACTAATTTGAAGAGAGTGACTTACCTTGTACTGGATGAGGCTGACAGAATGTTAGACATGGGATTTGAACCCCAAATTAGAAAGATTGTATCTCAGgta-tgtttgtactttctccaaagctatcatgtagtgtctttaaggaaagggtggttgaccaacattattagtcgatagattttatcttcccagtttattgttctgttgctaaataagaaccatcacggcttttgttcagaacttgagattgttccttatttttcacag
 ||||| ||  ||  ||||||||||||||||||  | ||||| |||||  ||||| |||||||||| |||||||| || ||  | || |||||| | |||||| |||||| |  |       | |||    ||| ||  |    || ||  |        |||   ||||  || ||   | |  |  |   ||||||     |                                                                 
GCACACGAACCTGCGGAGAGTGACTTACCTTGTCTTAGATGAAGCTGATCGAATGCTAGACATGGGTTTTGAACCTCAGATACGGAAAATTGTAGCCCAGgtactgtttgcaactaacatgtaactagttagtactgagtaatggggaaaagaaacc--tcaaatctatt--tccatttgtgtgctactgatagtttaccaacc-----------------------------------------------------------------

upper sequence: AT5G63120.1 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: Vv17s0000g09130.t01 (Vitis vinifera), 5'ss of exon 5
ACACACTAATTTGAAGAGAGTGACTTACCTTGTACTGGATGAGGCTGACAGAATGTTAGACATGGGATTTGAACCCCAAATTAGAAAGATTGTATCTCAGgtatgtttgtactttctccaaagctatcatgtagtgtctttaaggaaagggtggttgaccaacattattagtcgatagattttatcttcccagtttattgttctgttgctaaataagaaccatcacggcttttgttcagaacttgagattgttccttatttttcacag
||| || ||  ||   |||||||||||||||||| | |||||||||||| ||||||||||||||||||||||||| || || || || ||| | || || ||||| || | ||| ||     ||| || | |    | |   ||  | |  |  ||  |       || | |   | ||  ||||   | | ||| | |  ||| | |                                                            
ACATACAAACCTGCGAAGAGTGACTTACCTTGTATTAGATGAGGCTGACCGAATGTTAGACATGGGATTTGAACCTCAGATCAGGAAAATTATTTCCCAAgtatggtt-tccttgcttt---gct-tcctttctcatttacgagtca-gcttaatttgcatcaggaataactttttggaaattataagcactgttcact--tctatag------------------------------------------------------------