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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGAAAGTGGAGGATTCTACTAAAGTCCAGACTCTTCTCTTCAGTGCTACTTTGCCATCATGGGTGAAAAATgtgcgtccctttcaaatatttgtggctatttttaatgttttaagctttatagtttgctgctatgttcattttctctctatttgttgttgagaccttttcgcttgcttctactag

Basic information

species Arabidopsis thaliana
transcript AT5G62190.1
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT5G62190.1 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: GLYMA10G38680.1 (Glycine max), 5'ss of exon 5
GGAAAGTGGAGGATTCTACTAAAGTCCAGACTCTTCTCTTCAGTGCTACTTTGCCATCATGGGTGAAAAATgtgcgtccctttcaaatatttgtggctatttttaatgttttaagctttatagtttgctgctatgtt--cattttctctctatttgttgttgagaccttttcgcttgcttctactag
| || || ||  ||  || |||||| ||||| ||||| ||||||||||||||||||   ||||| ||  | ||  |   || |   ||  ||    ||   ||  |  | ||     ||||| || |   || |  |   |   |   | |||||||    |                         
GCAAGGTAGAAAATGTTAATAAAGTTCAGACACTTCTTTTCAGTGCTACTTTGCCAGACTGGGTTAAGCAAgtatgcttctatgtgatgatta---cttccttatacttattggatgttatatttagggtctttaatggtacgctgcttttatttgtgccag-------------------------

upper sequence: AT5G62190.1 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: GLYMA20G29060.1 (Glycine max), 5'ss of exon 5
GGAAAGTGGAGGATTCTACTAAAGTCCAGACTCTTCTCTTCAGTGCTACTTTGCCATCATGGGTGAAAAATgtgcgtccctttcaaatatttgtggctatttttaatgttttaagctttatagtttg---ctgctatgttcattttctctctatttgttgttgagaccttttcgcttgcttctactag
| || || ||  ||  || |||||| ||||| ||||| ||||||||||||||||||   ||||| ||  | ||  |   || |  |||  ||    ||  |||  |  | ||     ||||| || |   ||   ||||| |  |  | |||||||||    |                         
GCAAGGTAGAAAATGTTAATAAAGTTCAGACACTTCTTTTCAGTGCTACTTTGCCAGACTGGGTTAAGCAAgtatgcttctatgcaatggtta---cttctttatacttattggatgttatatttagggtctttaatgtt-acctggtttctatttgtgccag-------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|124970486|gb|EL044314.1|EL044314
EST:     AAGTCCAGACTCTTCTCTTCAGTGCTACTTTGCCATCATGGGTGAAAAAT                         ATCTCTAACAGGTTTCTTAAAAGAGACCAGAAGACTATTGATCTTGTTGGT
genomic: AAGTCCAGACTCTTCTCTTCAGTGCTACTTTGCCATCATGGGTGAAAAATgtgcgtccct ... cttctactagATCTCTAACAGGTTTCTTAAAAGAGACCAGAAGACTATTGATCTTGTTGGT
EST: gi|124720601|gb|EH812003.1|EH812003
EST:     TGCTACTTTGCCATCATGGGTGAAAAAT                         ATCTCTAACAGGTTTCTTAAAAGAGACCAGAAGACTATTGATCTTGTTGGT
genomic: TGCTACTTTGCCATCATGGGTGAAAAATgtgcgtccct ... cttctactagATCTCTAACAGGTTTCTTAAAAGAGACCAGAAGACTATTGATCTTGTTGGT
EST: gi|47828150|gb|CK117834.1|CK117834
EST:     AAGTCCAGACTCTTCTCTTCAGTGCTACTTTGCCATCATGGGTGAAAAAT                         ATCTCTAACAGGTTTCTTAAAAGAGACCAGAAGACTATTGATCTTGTTGGT
genomic: AAGTCCAGACTCTTCTCTTCAGTGCTACTTTGCCATCATGGGTGAAAAATgtgcgtccct ... cttctactagATCTCTAACAGGTTTCTTAAAAGAGACCAGAAGACTATTGATCTTGTTGGT