Sequence
atgc intronic sequence ATGC exonic sequenceGGTGTTAGAGTATGGAAAAGCAGTTCAGGAGAGTGTGTACGAACATATCCGTGTTGTTCGCGAAGGCCATCTTCGGATTATATTCTCCCAAGAGCTGAAGgtggtttaaagagcttttgattccaaatacttttaatcattaatgtgtattaaagtaacttagcttatcctttttccttttgccag
Basic information
species | Arabidopsis thaliana |
transcript | AT5G62090.2 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: AT5G62090.2 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: GLYMA09G26970.1 (Glycine max), 5'ss of exon 4
GGTGTTAGAGTATGGAAAAGCAGTTCAGGAGAGTGTGTACGAACATATCCGTGTTGTTCGCGAAGGCCATCTTCGGATTATATTCTCCCAAGAGCTGAAGgtggtttaaagagcttttgattccaaatacttttaatcattaatgtgtattaaagtaacttagctta--tcctttttccttttgccag
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GATGTTAGAATATGGAAAAGCAGTTCAAGAGAGTGTATATGAGCAGCTTCGTGTTGTTCGTGAAGGTCAACTTCGTATCATATTCACTCAAGACTTGAAGgt--tacaaattgttattgtagttaaatatattttctaattgaatattttctatataa-tgaccttaaattcctgttaatttgcacag
upper sequence: AT5G62090.2 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: GLYMA16G32260.1 (Glycine max), 5'ss of exon 6
GGTGTTAGAGTATGGAAAAGCAGTTCAGGAGAGTGTGTACGAACATATCCGTGTTGTTCGCGAAGGCCATCTTCGGATTATATTCTCCCAAGAGCTGAAGgtggtttaaagagcttttgattccaaatacttttaatcatta-atgtgtattaaagtaacttagcttatcctttttccttttgccag
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GATGTTAGAATATGGAAAAGCAGTTCAAGAGAGTGTATATGAGCAGCTTCGTGTTGTTCGTGAAGGTCAACTTCGTATCATATTCACTCAAGACTTGAAGgttaca-aaattgttatttgttaaatatattttccatttgaacattttctatataatgaccttga--attcctgttaatttgcacag
upper sequence: AT5G62090.2 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: Vv16s0100g00500.t01 (Vitis vinifera), 5'ss of exon 4
GGTGTTAGAGTATGGAAAAGCAGTTCAGGAGAGTGTGTACGAACATATCCGTGTTGTTCGCGAAGGCCATCTTCGGATTATATTCTCCCAAGAGCTGAAGgtggtttaaagagcttttgattccaaatactt-ttaatcattaatgtgtatta--aagtaacttagcttatcctttttccttttgccag
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GATGTTAGAATATGGGAAAGCAGTTCAGGAGAGTGTATATGAGCAACTCCGAGTTGTTCGTGAGGGTCAGCTTCGTATCATATTTACCCCTGATTTAAAGgttaaacaaaagctatctgatt---agtatttattgcctgctcacttattttataaaataacttcatttctatgcatgtaatgattcagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|164109615|gb|ES024783.1|ES024783EST: GTGTTGTTCGCGAAGGCCATCTTCGGATTATATTCTCCCAAGAGCTGAAG ATTCTCTCATGGGAGTTCTGTACTCGTCGACA
genomic: GTGTTGTTCGCGAAGGCCATCTTCGGATTATATTCTCCCAAGAGCTGAAGgtggtttaaa ... cttttgccagATTCTCTCATGGGAGTTCTGTACTCGTCGACA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GGTGTTAGAGTATGGAAAAGCAGTTCAGGAGAGTGTGTACGAACATATCCGTGTTGTTCGCGAAGGCCATCTTCGGATTATATTCTCCCAAGAGCTGAAGgtggtttaaagagcttttgattccaaatacttttaatcattaatgtgtattaaagtaacttagcttatcctttttccttttgccag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG