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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTGTTTCTTTATCTTCTTTCTACAATGAAACCATTGTTGGATGTCCAACTTGTGCTTGCGGATGTCAAAACAACAGAACAGAATCCGGTGCCTGCCTCGAgtaagtagttcaaatcaatattcagtttcctcctcttgttctctgttcagttttcaatcataaagtcccacactttttatgtatttgcag

Basic information

species Arabidopsis thaliana
transcript AT5G60920.1
intron # 5
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|124866822|gb|EH951259.1|EH951259
EST:     TGTGCTTGCGGATGTCAAAACAACAGAACAGAATCCGGTGCCTGCCTCGA                         CCCGGACACACCACACTTAGCC
genomic: TGTGCTTGCGGATGTCAAAACAACAGAACAGAATCCGGTGCCTGCCTCGAgtaagtagtt ... gtatttgcagCCCGGACACACCACACTTAGCC
EST: gi|125157603|gb|EL186595.1|EL186595
EST:     TGTGCTTGCGGATGTCAAAACAACAGAACAGAATCCGGTGCCTGCCTCGA                         CCCGGACACACCACACTTAGCCTCGGTTGTGTCACCACCAACAAAGAAAGG
genomic: TGTGCTTGCGGATGTCAAAACAACAGAACAGAATCCGGTGCCTGCCTCGAgtaagtagtt ... gtatttgcagCCCGGACACACCACACTTAGCCTCGGTTGTGTCACCACCAACAAAGAAAGG
EST: gi|124953292|gb|EL028496.1|EL028496
EST:     TGTGCTTGCGGATGTCAAAACAACAGAACAGAATCCGGTGCCTGCCTCGA                         CCCGGACACACCACACTTAGCCTCGGTTGTGTCACCACCAACAAAGAAAGG
genomic: TGTGCTTGCGGATGTCAAAACAACAGAACAGAATCCGGTGCCTGCCTCGAgtaagtagtt ... gtatttgcagCCCGGACACACCACACTTAGCCTCGGTTGTGTCACCACCAACAAAGAAAGG
EST: gi|124720928|gb|EH812330.1|EH812330
EST:     CGGTGCCTGCCTCGA                         CCCGGACACACCACACTTAGCCTCGGTTGTGTCACCACCAACAAAGAAAGG
genomic: CGGTGCCTGCCTCGAgtaagtagtt ... gtatttgcagCCCGGACACACCACACTTAGCCTCGGTTGTGTCACCACCAACAAAGAAAGG
EST: gi|124942587|gb|EL018840.1|EL018840
EST:     CCGGTGCCTGCCTCGA                         CCCGGACACACCACACTTAGCCTCGGTTGTGTCACCACCAACAAAGAAAGG
genomic: CCGGTGCCTGCCTCGAgtaagtagtt ... gtatttgcagCCCGGACACACCACACTTAGCCTCGGTTGTGTCACCACCAACAAAGAAAGG