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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTAGTAGAAAAGGTCAAGGGGCATCCTTTGTGGCAAGCGACTCCCATGgtaacaatggagtctcatctgaattctttgtcggtgttatttacttacaaaagcggagaagctaacatgagaatgtttatttcag

Basic information

species Arabidopsis thaliana
transcript AT5G59430.2
intron # 5
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86037146|gb|DR332901.1|DR332901
EST:     GTAGTAGAAAAGGTCAWGGGGCATCCTTTGTGGCAAGCGACTCCCATG                         TGAAACTACGGATCA
genomic: GTAGTAGAAAAGGTCAAGGGGCATCCTTTGTGGCAAGCGACTCCCATGgtaacaatgg ... tttatttcagTGAAACTACGGATCA
EST: gi|86079249|gb|DR375006.1|DR375006
EST:     GTAGTAGAAAAGGTCAAGGGGCATCCTTTGTGGCAAGCGACTCCCATG                         TGAAACTACGGATCAAGTCGTTCAGGGTGCCTGAGCTTTTCATAGAGATTC
genomic: GTAGTAGAAAAGGTCAAGGGGCATCCTTTGTGGCAAGCGACTCCCATGgtaacaatgg ... tttatttcagTGAAACTACGGATCAAGTCGTTCAGGGTGCCTGAGCTTTTCATAGAGATTC
EST: gi|164128597|gb|ES039391.1|ES039391
EST:     GCGACTCCCATG                         TGAAACTACGGATCAAGTCGTTCAGGGTGCCTGAGCTTTTCATAGAGATTC
genomic: GCGACTCCCATGgtaacaatgg ... tttatttcagTGAAACTACGGATCAAGTCGTTCAGGGTGCCTGAGCTTTTCATAGAGATTC