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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGCCTTGATTTGTCTTAAAAATGCTCCCAACATTCCTGCAAAGAACTTCCATGCCCTCACGAGGTTAGACGAAAATCGTGCCAAATGCCAGgtactagatttcacacctatatgtgattgtatgcaatatatttgcatacatatgattgacaatttccattttgtag

Basic information

species Arabidopsis thaliana
transcript AT5G58330.1
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT5G58330.3 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: LOC_Os08g44810.1 (Oryza sativa), 5'ss of exon 7
TGCCTTGATTTGTCTTAAAAATGCTCCCAACATTCCTGCAAAGAACTTCCATGCCCTCACGAGGTTAGACGAAAATCGTGCCAAATGCCAGgtactagatttcacacc----tatatgtgat---tgtatgcaatatatttgcatacatatgattgacaatttccattttgtag
||| ||||||||  | || |||||||||||||| || ||||| ||||| |||||  | |||||||| || |||||| | ||||| ||||||||||| ||  | | | |    ||| ||||||   | | ||   | |  || || ||| || ||||   | ||   ||||||||
TGCATTGATTTGCTTAAAGAATGCTCCCAACATACCAGCAAAAAACTTTCATGCATTGACGAGGTTGGATGAAAATAGAGCCAAGTGCCAGgtacttgacgttaaatcgtagtatttgtgatgtatttttgtggttttatttcaaacaaataattgg--acttgttttttgtag

upper sequence: AT5G58330.3 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: Vv13s0019g05250.t01 (Vitis vinifera), 5'ss of exon 7
TGCCTTGATTTGTCTTAAAAATGCTCCCAACATTCCTGCAAAGAACTTCCATGCCCTCACGAGGTTAGACGAAAATCGTGCCAAATGCCAGgt--actagatt-tcacacctatatgtgattgt-atgcaat-atatttgc---atacatatgattgacaatttccattttgtag--------------------
||| ||||| ||| | ||||||||||| ||||| |||||||||||||| |||||  | || |||||||| || ||| | || ||||| |||||  | ||| || | ||   ||  |  |    | || || | || |||       ||| | |     ||||     || | |                      
TGCATTGATATGTATGAAAAATGCTCCAAACATACCTGCAAAGAACTTTCATGCTTTGACTAGGTTAGATGAGAATAGAGCAAAATGTCAGgttaagtagcttgtgaccattacctcagtccatgatacagtcatgtttattatgaacaaaaggaaatcaataattgttgtatgaattcgatgtgatttgtgcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|125200072|gb|EL215026.1|EL215026
EST:     TAGACGAAAATCGTGCCAAATGCCAG                         CTTGCTCTTAAAGCCGGTGTTTTCTATGACAAAGTGTCTAATATGACCATA
genomic: TAGACGAAAATCGTGCCAAATGCCAGgtactagatt ... cattttgtagCTTGCTCTTAAAGCCGGTGTTTTCTATGACAAAGTGTCTAATATGACCATA
EST: gi|116454058|gb|EG496650.1|EG496650
EST:     AGAACTTCCATGCCCTCACGAGGTTAGACGAAAATCGTGCCAAATGCCAG                         CTTGCTCTTAAAGCCGGTGTTTTCTATGACAAAGTGTCTAATATGACCATA
genomic: AGAACTTCCATGCCCTCACGAGGTTAGACGAAAATCGTGCCAAATGCCAGgtactagatt ... cattttgtagCTTGCTCTTAAAGCCGGTGTTTTCTATGACAAAGTGTCTAATATGACCATA
EST: gi|124934868|gb|EL011900.1|EL011900
EST:     GAAAATCGTGCCAAATGCCAG                         CTTGCTCTTAAAGCCGGTGTTTTCTATGACAAAGTGTCTAATATGACCATA
genomic: GAAAATCGTGCCAAATGCCAGgtactagatt ... cattttgtagCTTGCTCTTAAAGCCGGTGTTTTCTATGACAAAGTGTCTAATATGACCATA
EST: gi|124722366|gb|EH813768.1|EH813768
EST:     CATGCCCTCACGAGGTTAGACGAAAATCGTGCCAAATGCCAG                         CTTGCTCTTAAAGCCGGTGTTTTCTATGACAAAGTGTCTAATATGACCATA
genomic: CATGCCCTCACGAGGTTAGACGAAAATCGTGCCAAATGCCAGgtactagatt ... cattttgtagCTTGCTCTTAAAGCCGGTGTTTTCTATGACAAAGTGTCTAATATGACCATA