1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
GTATGCACCTCCAAAATGAACCTTAGCGATGAGGTTGACTTGGAAGACTATGTTTCACGGCCTGATAAAATTAGCGCTGCTGAGgttagtttattttgcttaccattctattcttcccgctatagtttacttttaccatgatatatcctccagtgtttctgggtcaccacctaatgatgttctt...
species | Arabidopsis thaliana |
transcript | AT5G58290.1 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: TTGACTTGGAAGACTATGTTTCACGGCCTGATAAAATTAGCGCTGCTGAG ATAGCAGCAATTTGEST: gi|124865166|gb|EH949603.1|EH949603
genomic: TTGACTTGGAAGACTATGTTTCACGGCCTGATAAAATTAGCGCTGCTGAGgttagtttat ... aacaatgcagATAGCAGCAATTTG
EST: TTGACTTGGAAGACTATGTTTCACGGCCTGATAAAATTAGCGCTGCTGAG ATAGCAGCAATTTGCCAGGAAGCTGGTATEST: gi|164070328|gb|EL992799.1|EL992799
genomic: TTGACTTGGAAGACTATGTTTCACGGCCTGATAAAATTAGCGCTGCTGAGgttagtttat ... aacaatgcagATAGCAGCAATTTGCCAGGAAGCTGGTAT
EST: TTGACTTGGAAGACTATGTTTCACGGCCTGATAAAATTAGCGCTGCTGAG ATAGCAGCAATTTGCCAGGAAGCTGGTATGCAEST: gi|116455275|gb|EG497867.1|EG497867
genomic: TTGACTTGGAAGACTATGTTTCACGGCCTGATAAAATTAGCGCTGCTGAGgttagtttat ... aacaatgcagATAGCAGCAATTTGCCAGGAAGCTGGTATGCA
EST: TTGACTTGGAAGACTATGTTTCACGGCCTGATAAAATTAGCGCTGCTGAG ATAGCAGCAATTTGCCAGGAAGCTGGTATGCATGCGGTGCGAAAGAACAGAEST: gi|124761073|gb|EH851203.1|EH851203
genomic: TTGACTTGGAAGACTATGTTTCACGGCCTGATAAAATTAGCGCTGCTGAGgttagtttat ... aacaatgcagATAGCAGCAATTTGCCAGGAAGCTGGTATGCATGCGGTGCGAAAGAACAGA
EST: TTGACTTGGAAGACTATGTTTCACGGCCTGATAAAATTAGCGCTGCTGAG ATAGCAGCAATTTGCCAGGAAGCTGGTATGCATGCGGTGEST: gi|86084279|gb|DR380038.1|DR380038
genomic: TTGACTTGGAAGACTATGTTTCACGGCCTGATAAAATTAGCGCTGCTGAGgttagtttat ... aacaatgcagATAGCAGCAATTTGCCAGGAAGCTGGTATGCATGCGGTG
EST: TTGACTTGGAAGACTATGTTTCACGGCCTGATAAAATTAGCGCTGCTGAG ATAGCAGCAATTTGCCAGGAAGCTGGTATGCATGCGGTGCGAAAGAACAGAEST: gi|163991720|gb|EL992028.1|EL992028
genomic: TTGACTTGGAAGACTATGTTTCACGGCCTGATAAAATTAGCGCTGCTGAGgttagtttat ... aacaatgcagATAGCAGCAATTTGCCAGGAAGCTGGTATGCATGCGGTGCGAAAGAACAGA
EST: CTTGGAAGACTATGTTTCACGGCCTGATAAAATTAGCGCTGCTGAG ATAGCAGCAATTTGCCAGGAAGCTGGTATGCATGCGGTGCGAAAGAA
genomic: CTTGGAAGACTATGTTTCACGGCCTGATAAAATTAGCGCTGCTGAGgttagtttat ... aacaatgcagATAGCAGCAATTTGCCAGGAAGCTGGTATGCATGCGGTGCGAAAGAA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTATGCACCTCCAAAATGAACCTTAGCGATGAGGTTGACTTGGAAGACTATGTTTCACGGCCTGATAAAATTAGCGCTGCTGAGgttagtttattttgcttaccattctattcttcccgctatagtttacttttaccatgatatatcctccagtgtttctgggtcaccacctaatgatgttctt
- - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -cccgctat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tatcctcc