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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATTGAACACCGGCGAGCCTACAATTGTGAAATCATGCTTTCAAAAGTGAAAGTACCTTTACAGGATTTGACGgtaatataaagctagacaggtttaggttgtactgtaatcatagctttttaatctggtacaatgtctatgtgtcgctatgtctgccatgataattaaaagctaagtgtctctaaaatattacag

Basic information

species Arabidopsis thaliana
transcript AT5G58160.1
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT5G58160.1 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: GLYMA17G08230.1 (Glycine max), 5'ss of exon 9
ATTGAACACCGGCGAGCCTACAATTGTGAAATCATGCTTTCAAAAGTGAAAGTACCTTTACAGGATTTGACGgtaatataaagctagacaggtttaggttgtactgtaatcatagctttttaatctggtacaatgtctatgtgtcgctatgtctgccatgataattaaaagctaagtgtctctaaaatattacag
||||| ||  ||||||| || |||||||||||||||||||||||||||||||| || || || ||||| | ||||| ||  |  |    |  |||| | | |    ||||           || |  |||| ||   ||  |        ||||    | ||||   ||| ||| |                   
ATTGAGCATAGGCGAGCATATAATTGTGAAATCATGCTTTCAAAAGTGAAAGTGCCATTGCATGATTTAATGgtaagattgatat---tacatttatggtctctaataatgtagtaaagaaaaccaagtactatcattaaataatatggagtcttagttaataa--gaaaactatga------------------

upper sequence: AT5G58160.1 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: GLYMA02G36440.1 (Glycine max), 5'ss of exon 11
ATTGAACACCGGCGAGCCTACAATTGTGAAATCATGCTTTCAAAAGTGAAAGTACCTTTACAGGATTTGACGgtaatataaagctagacaggtttaggttgtactgtaatcatagctttttaatctggtacaat-gtctatgtgtcgctatgtctgccatgataattaaaagctaagtgtctctaaaatattacag
||||| ||  ||||||| || |||||||||||||||||||||||||||||||| || || || ||||| | ||||| ||  |  |    |  |||| | |   || | || ||        || |  |||| ||  || |  |        ||  || | |  ||| | |||   |   |                
ATTGAGCATAGGCGAGCATATAATTGTGAAATCATGCTTTCAAAAGTGAAAGTGCCGTTGCATGATTTAATGgtaagattgatat---tacatttatggt---ctctgataatgtaaagaaaaccaagtactatcatcaaaataaaatggagt--gcta-gtgaataagaagactatgatt---------------

upper sequence: AT5G58160.1 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: Vv11s0016g00160.t01 (Vitis vinifera), 5'ss of exon 6
ATTGAACACCGGCGAGCCTACAATTGTGAAATCATGCTTTCAAAAGTGAAAGTACCTTTACAGGATTTGACGgtaatataaagctagacaggtttaggttgtactgtaatcatagctttttaatctggtacaatgtctatgtgtcgc-tatgtctgccatgataattaaaagctaagtgtctctaaaatattacag
||||||||| || |||||||||||||||||||||||||||| || ||||| || || || || || || | |||||  ||||  ||     | || |  | | ||| |  ||| | | | |||      ||  |  | |  |   || ||        |  ||||   | |   ||                    
ATTGAACACAGGAGAGCCTACAATTGTGAAATCATGCTTTCGAAGGTGAAGGTGCCATTGCATGAATTAATGgtaagctaaatataattgtgctt-gtctatcctgca--catggttctctaaa--accactgttacaaaattctgcataaacgaaataaaataaaatagaataaaa-------------------