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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGAGAGCTAACTTTGAGTTCTTGAAGAAACTTGGAGTTGATTGGTGGTGTTTTCATGACAGAGACATAGCACCTGATGGCACTACACTTGAGgtaactcgagcttctgaacttacaccattttgctttacattgaaactacaatctgctttattgcctggtgttataaaccattttggtcctgatatttcct...

Basic information

species Arabidopsis thaliana
transcript AT5G57655.1
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT5G57655.1 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: LOC_Os07g47290.1 (Oryza sativa), 5'ss of exon 6
TGAGAGCTAACTTTGAGTTCTTGAAGAAACTTGGAGTTGATTGGTGGTGTTTTCATGACAGAGACATAGCACCTGATGGCACTACACTTGAGgtaactcgagcttctgaacttacaccattttgctttacattgaaactacaatctgctt-tattgcctggtgttataaaccattttggtcctgatatttcct--
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TGAGAGCTCACTTTGAGTTCATGGAGAAGCTTGGAGTTGACAGGTGGTGCTTCCATGACAGGGATATTGCCCCTGATGGCAAAACACTCACGgtatgcc---ttcatgcataatagtcttattatttgtcttcgaatgtggtttgaacttgtgaagctcgaggctatagctatttatcatgcctacccttggtta
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116424348|gb|EG466940.1|EG466940
EST:     GGTGGTGTTTTCATGACAGAGACATAGCACCTGATGGCACTACACTTGAG                         GAATCTAACAAAAACTTGGATGAAGTTATCGAACTCGCCAAAGAACTCCAA
genomic: GGTGGTGTTTTCATGACAGAGACATAGCACCTGATGGCACTACACTTGAGgtaactcgag ... taatctgcagGAATCTAACAAAAACTTGGATGAAGTTATCGAACTCGCCAAAGAACTCCAA
EST: gi|163971668|gb|ES137878.1|ES137878
EST:     ATAGCACCTGATGGCACTACACTTGAG                         GAATCTAACAAAAACTTGGATGAAGTTATCGAACTCGCCAAAGAACTCCAA
genomic: ATAGCACCTGATGGCACTACACTTGAGgtaactcgag ... taatctgcagGAATCTAACAAAAACTTGGATGAAGTTATCGAACTCGCCAAAGAACTCCAA
EST: gi|301502681|gb|HO208221.1|HO208221
EST:     G-GGTGTTTTCATGACAGAGACATAGCACCTGATGGCACTACACTTGCAG                         GAATCTAACAAAAACTTGGATGAAGTTATCGAACTCGCCAAAGAACTCCA
genomic: GTGGTGTTTTCATGACAGAGACATAGCACCTGATGGCACTACACTTG-AGgtaactcgag ... taatctgcagGAATCTAACAAAAACTTGGATGAAGTTATCGAACTCGCCAAAGAACTCCA
EST: gi|301501388|gb|HO206928.1|HO206928
EST:     GGTGGTGTTTTCATGACAGAGACATAGCACCTGATGGCACTACACTTGAG                         GAATCTAACAAAAACTTGGATGAAGTTATCGAACTCGCCAAAGAACTCCAA
genomic: GGTGGTGTTTTCATGACAGAGACATAGCACCTGATGGCACTACACTTGAGgtaactcgag ... taatctgcagGAATCTAACAAAAACTTGGATGAAGTTATCGAACTCGCCAAAGAACTCCAA