Sequence
atgc intronic sequence ATGC exonic sequenceTCTATGGGATAGTTCGTGATGGTCCTGATGGTTCTCTAGCAACTGTCGCGGAGTTCATGGTTAACGGATCTTTGAAACAGTTCTTGCAGAAGAAGGATAGgtaaaaaagtttcacctattcatgcattatatactattttcctagagtatccaattatctgacatcacattggttgactcctccag
Basic information
species | Arabidopsis thaliana |
transcript | AT5G57610.1 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: AT5G57610.1 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: GLYMA13G01190.1 (Glycine max), 5'ss of exon 7
TCTATGGGATAGTTCGTGATGGTCCTGATGGTTCTCTAGCAACTGTCGCGGAGTTCATGGTTAACGGATCTTTGAAACAGTTCTTGCAGAAGAAGGATAGgtaaaaaagttt-cacctattcatgcattatat-actattt------tcctagagtatccaattatctgacatcacattggttgactcctccag----------------------------------------------
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TTTATGGCATTGTTCGTGATGGCCCCGATGGTTCTTTAGCAACAGTCACAGAGTTCATGATTAATGGATCTTTGAAACAGTTCTTGCATAAGAAAGATAGgtaacttgatgcatgcatgggcttatatttcatcaatatttaatatgttttaaggcactcaaatgtgcagccttccatatgaaaaccctcatggactggtgatgtattatttatgctgtttattctgagcaatttaacag
upper sequence: AT5G57610.1 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: GLYMA17G07320.1 (Glycine max), 5'ss of exon 10
TCTATGGGATAGTTCGTGATGGTCCTGATGGTTCTCTAGCAACTGTCGCGGAGTTCATGGTTAACGGATCTTTGAAACAGTTCTTGCAGAAGAAGGATAGgtaaaaaagt---ttcacctattcatg------cattatatactattttcct--agagtatccaattatctgacatcacattggttgactcctccag-----------------------------------------------
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TTTATGGCATTGTTCGTGATGGCCCCGATGGTTCTTTAGCAACAGTCACAGAGTTCATGATTAATGGATCTTTGAAACAGTTCTTGCATAAGAAAGATAGgtaatttgatgcatgcatgggcttatatttcatcaatatttaatagtatgctttaaggcactgaaatgtgcagccttccatctgaaagccctcatggactgttgatgtatttatttatgctgtttattctgagcaatttaacag
upper sequence: AT5G57610.1 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: Vv11s0052g01480.t01 (Vitis vinifera), 5'ss of exon 4
TCTATGGGATAGTTCGTGATGGTCCTGATGGTTCTCTAGCAACTGTCGCGGAGTTCATGGTTAACGGATCTTTGAAACAGTTCTTGCAGAAGAAGGATAGgtaaaaaagtttcacctattcatgcattatatactattttcctagagtatccaattatctgacatcacattggttgactcctccag---------------------------------------------------------------------------------------
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TTTATGGTATAGTTCGTGATGGCCCTGGTGGCTCTTTAGCAACTGTGACAGAATTCATGGTTAATGGTTCTTTGAAACAATTTTTGCAGAAAAAGGACAGgtaat--tgttttga-tggtggtttactgaattgcagtttatgagtccttttaactttcttctgttttaggatgtaggctataaagcatatacttagaagtgctcattttttgctgaaaagaaatgaaaaatttatttcctgtggaatgtgacaattttatgctattgaacagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|124966868|gb|EL040942.1|EL040942EST: GAGTTCATGGTTAACGGATCTTTGAAACAGTTCTTGCAGAAGAAGGATAG AACTATTGATCGTCGCAAAAGACTCA
genomic: GAGTTCATGGTTAACGGATCTTTGAAACAGTTCTTGCAGAAGAAGGATAGgtaaaaaagt ... actcctccagAACTATTGATCGTCGCAAAAGACTCA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
TCTATGGGATAGTTCGTGATGGTCCTGATGGTTCTCTAGCAACTGTCGCGGAGTTCATGGTTAACGGATCTTTGAAACAGTTCTTGCAGAAGAAGGATAGgtaaaaaagtttcacctattcatgcattatatactattttcctagagtatccaattatctgacatcacattggttgactcctccag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG