Sequence
atgc intronic sequence ATGC exonic sequenceCAGAAAGTTGATGAGGCTTCTCTTGAGGAAACTCAGATATACGTATGTGACATTAATCCTAACATGTTAAACGTTGGGAAACAACGAGCTGCTGAGAGAGgtgaaagatcagatgtttgtttgtgcaacaaatttgtatcctctgttattcctttatgttttttttctatgtatgtgtgagctcaggcttcatttactatcttgaatag
Basic information
species | Arabidopsis thaliana |
transcript | AT5G57300.2 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: AT5G57300.2 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: GLYMA08G22890.1 (Glycine max), 5'ss of exon 4
CAGAAAGTTGATGAGGCTTCTCTTGAGG---AAACTCAGATATACGTATGTGACATTAATCCTAACATGTTAAACGTTGGGAAACAACGAGCTGCTGAGAGAGgtgaaagatcagatgtttgtttgtgcaacaaatttgta-tcctctgttattcctttatgttttttttctatgtatgtgtgagctcaggct-tcatttactatcttgaatag
| | | | | | || | |||| ||||||||||||| |||||||||||||| ||||| |||||||| ||||| ||||| || || | |||| ||| || || | | || ||| |||||| ||| | || | | | ||| |||| | | | | || || || | | | | | || | |||||
---GGTGCTTTTCAAGATACTTTAGAGGCAGAAACTCAGATATATGTATGTGACATTAACCCTAAGATGTTAAATGTTGGCAAACAGCGGGCCTCAGAGAAGGgtaaatgagaatgtcttaaactgt-caacaatttttcaatctttcataaagaattttggtttaatatatcttcatttgcaaggaatgaatattttctgcttattataatag
upper sequence: AT5G57300.2 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: GLYMA07G03210.2 (Glycine max), 5'ss of exon 3
CAGAAAGTTGATGAGGCTTCTCTTGAGG---AAACTCAGATATACGTATGTGACATTAATCCTAACATGTTAAACGTTGGGAAACAACGAGCTGCTGAGAGAGgtgaaagatcagatgtttgtttgtgcaacaaat--ttgtatcctctgttattcctttatgttttttttctatgtatgtg-tgagctcaggcttcatttactatcttgaatag
| | | | | | || | |||| ||||||||||||| |||||||||||||| ||||| |||||||| ||||| |||| || || | |||| ||| || || | | || ||| |||||| | || | | | | ||| |||| | | | | || || | | | | | || | |||||
---GGTGCTTTTCAAGATACTTTAGAGGCAGAAACTCAGATATATGTATGTGACATTAACCCTAAGATGTTAAATGTTGGCAAACGGCGGGCCTCAGAGAAGGgtaaatgagaatgttttaaactgt-caacaatttgttcaagctctcataaagaattttggtttgatatatcttcatttgctaggaatgaaaattttctgcttattataatagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|86085958|gb|DR381717.1|DR381717EST: CATTAATCCTAACATGTTAAACGTTGGGAAACAACGAGCTGCTGAGAGAG GTCTAAGAGATAACAAGTCACTCGTATGGGTCGAAGGAGATGC
genomic: CATTAATCCTAACATGTTAAACGTTGGGAAACAACGAGCTGCTGAGAGAGgtgaaagatc ... tcttgaatagGTCTAAGAGATAACAAGTCACTCGTATGGGTCGAAGGAGATGC
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
CAGAAAGTTGATGAGGCTTCTCTTGAGGAAACTCAGATATACGTATGTGACATTAATCCTAACATGTTAAACGTTGGGAAACAACGAGCTGCTGAGAGAGgtgaaagatcagatgtttgtttgtgcaacaaatttgtatcctctgttattcctttatgttttttttctatgtatgtgtgagctcaggcttcatttactatcttgaatag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT