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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGATATCCATAAACGCGGAGGAACAATCATTGGGACCTCAAGAGGTGGACATGATACCAACAAGATAGTTGATAGCATTCAAGATCGAGGAATCAATCAGgttagggaataaacacagccactgctttttacgttgtatgtgaaaaagtttgtcaaccttttcttgatgtagtatctgttatcatttag

Basic information

species Arabidopsis thaliana
transcript AT5G56630.1
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT5G56630.1 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: GRMZM2G004932_T01 (Zea mays), 5'ss of exon 6
TGATATCCATAAACGCGGAGGAACAATCATTGGGACCTCAAGAGGTGGACATGATACCAACAAGATAGTTGATAGCATTCAAGATCGAGGAATCAATCAGgttagggaataaacacagccactgctttttacgttgtatgtgaaaaagtttgtc--aaccttttcttgatgtagtatctgttatcatttag
||| ||||| ||| | || || ||| |  |||| || ||| | ||||| ||||||||||| ||||| ||||||| |||||||||||| |||||||| |||||        |||||      |  || || |  |   |  | |      |  |   |    ||   |||| || ||       | ||  ||
TGACATCCACAAAAGGGGTGGTACAGTTCTTGGAACATCACGCGGTGGCCATGATACCAAAAAGATTGTTGATAACATTCAAGATCGTGGAATCAACCAGgt--------aaacatgattgcacctattgatataacacataactcttctgattggagaagttgactgatatactagagcgccttatccag

upper sequence: AT5G56630.1 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: GRMZM5G879882_T03 (Zea mays), 5'ss of exon 6
TGATATCCATAAACGCGGAGGAACAATCATTGGGACCTCAAGAGGTGGACATGATACCAACAAGATAGTTGATAGCATTCAAGATCGAGGAATCAATCAGgttagggaataaacacagccactgctttttacgttgtatgtga-aaaagtttgtcaaccttttcttgatgtagtatctgttatcatttag
||||||||| ||||| || || ||| |  |||| || ||| ||||||| ||||||||||| ||||| ||||| | |||||||||||| ||||| ||||||||  | |  |    |       | ||||  |       | |     | |||    ||   ||  |   |     ||||            
TGATATCCACAAACGAGGTGGTACAGTTCTTGGAACATCACGAGGTGGCCATGATACCAAAAAGATTGTTGACAACATTCAAGATCGTGGAATTAATCAGgtatgtgcttgctgattagtgtttctttgcataacccttattttggaggttgagtaaatgttcttctttaccacatctag----------