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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCTTGCTCTTCAAATGGCGGCTGAAGCCGATAATCCGTATTTCCGACTTGGATACAACAGTCTAGGCGCTTTCGCTACCATTAACCATCTTCACTTTCAGgtaaacagaatcaaatagttcgaaatttgtttataaccaatcggttttaatttgttatgaattctcgaaatcgaataaagcaacatgaactgaaccaaataactgaatgctctcacctttatactattgtgatatttatggagattctacttggaacag

Basic information

species Arabidopsis thaliana
transcript AT5G55120.1
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT5G55120.1 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: GLYMA14G02500.1 (Glycine max), 5'ss of exon 5
GCTTGCTCTTCAAATGGCGGCTGAAGCCGATAATCCGTATTTCCGACTTGGATACAACAGTCTAGGCGCTTTCGCTACCATTAACCATCTTCACTTTCAGgtaaacagaatcaaatagttcgaaatttgtttataaccaatcggttttaatttgttatg-aattctcgaaatcgaataaagcaacatgaactgaaccaaataactgaatgctctcacctttatactattgtgatatttatggagattctacttggaacag
 ||||| ||||| ||||| |  ||||| |||||||| ||||| ||| | || ||||||||| | || ||||| || |||||||||||||||||||| ||||||         ||||  | | |      || |||    ||     | | |  ||| |  ||||||  |||||  ||   ||||  ||   |||       |  |||||       |                                           
CCTTGCACTTCACATGGCAGTGGAAGCTGATAATCCATATTTTCGATTGGGTTACAACAGTTTGGGTGCTTTTGCAACCATTAACCATCTTCACTTCCAGgtactggatgctaaattataccac-----ttaatagttcatgttgatgattccgttgtttaattctacaaatctgatc--gcaatttgg--tgattttggca--tgaatatatatgcag-----------------------------------------

upper sequence: AT5G55120.1 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: GLYMA02G46230.1 (Glycine max), 5'ss of exon 5
GCTTGCTCTTCAAATGGCGGCTGAAGCCGATAATCCGTATTTCCGACTTGGATACAACAGTCTAGGCGCTTTCGCTACCATTAACCATCTTCACTTTCAGgtaaacagaatcaaatagttcgaaatttgtttataaccaatcggttttaatttgttatg-aattctcgaaatcgaataaagcaacatgaactgaaccaaataactgaatgctctcacctttatactattgtgatatttatggagattctacttggaacag
 ||||| ||||| ||||| |  |||||||||||||| ||||| ||| | || ||||||||  | || ||||| || || || |||||||||||||| ||||||      |   |||  | | |       | |||    ||     | | |  ||| |  ||||||  |||||  ||   ||||  ||   |||                                                                  
CCTTGCACTTCAGATGGCAGTGGAAGCCGATAATCCTTATTTTCGATTGGGTTACAACAGCTTGGGTGCTTTTGCAACTATCAACCATCTTCACTTCCAGgtactggatactgaattatacca------ctaataggtcatgttgatgattccgttgtttaattctacaaatctgatt--gcaatttgg--tgattttgcag----------------------------------------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|47828624|gb|CK118308.1|CK118308
EST:     GATACAACAGTCTAGGCGCTTTCGCTACCATTAACCATCTTCACTTTCAG                         GCTTACTATTTGGCAATGCAATTCCCGATAGAGAAAGCTTCTTCCTTGAAG
genomic: GATACAACAGTCTAGGCGCTTTCGCTACCATTAACCATCTTCACTTTCAGgtaaacagaa ... cttggaacagGCTTACTATTTGGCAATGCAATTCCCGATAGAGAAAGCTTCTTCCTTGAAG