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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATTAGGAGTGGAGAGGCTTAGCAAAGATGATGTTCAGAGAATGCAATGGGAGGTATTAGAGGCCAAGATTGGGAATTGGATACATTACATGAGAATATCCgtaaaaaactctctcccacaaaacaagaataccttactagatcgctactgtttccttcgtttacacggcacttgcttttgttgccttgagacag

Basic information

species Arabidopsis thaliana
transcript AT5G52340.1
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT5G52340.1 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: GLYMA13G05040.1 (Glycine max), 5'ss of exon 5
ATTAGGAGTGGAGAGGCTTAGCAAAGATGATGTTCAGAGAATGCAATGGGAGGTATTAGAGGCCAAGATTGGGAATTGGATACATTACATGAGAATATCCgtaaaaaactctctcccacaaaacaagaataccttactagatcgctactgtttccttcgtttacacggcacttgcttttgttgccttgagacag
|||||| ||||||||||| || |||||||||||||| | ||||||||||||||| || ||||| |||||||| |||||||| ||||||||||||||  | |||| |              ||   | ||| | ||  ||  |  |  || |||  | |  |  ||     ||  ||||   ||  | |      
ATTAGGTGTGGAGAGGCTGAGTAAAGATGATGTTCAAAAAATGCAATGGGAGGTTTTGGAGGCAAAGATTGGAAATTGGATTCATTACATGAGAATTGCTgtaaga------------tgaatataaaattcatttttatgtgtc--ctattttttccaat-gcatctttctaactttacatgagtag------

upper sequence: AT5G52340.1 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: Vv08s0007g02340.t01 (Vitis vinifera), 5'ss of exon 5
ATTAGGAGTGGAGAGGCTTAGCAAAGATGATGTTCAGAGAATGCAATGGGAGGTATTAGAGGCCAAGATTGGGAATTGGATACATTACATGAGAATATCCgtaaaaaactctctcccacaaaacaagaataccttactagatcgctactgtttccttcgtttacacggcacttgcttttgttgccttgagacag---------------
|||||| ||||| |  ||||  ||||||||||| ||||  ||||| ||||| || || ||||| |||||||| |||||||| |||| |||| | ||  | ||||     |       ||   | | || ||  |   |   |   |     |   |  || |  |||  | || || ||  | |    |                    
ATTAGGTGTGGAAAAACTTACTAAAGATGATGTCCAGAAGATGCAGTGGGAAGTTTTGGAGGCTAAGATTGGAAATTGGATTCATTTCATGCGGATTGCTgtaagggtttactaggaactggataggattatttgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtacg-tattttctcttaatccagccatttcatcatgcttgtaacag