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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCAACGGCATTTGGGATGAAGAGTGTGGTGTATGTACCTCGGATTAAGCCAGAGACAGTATCTGCGTTGTCTGCACTATGTGACAAGGCCACCATGgtgagcacagggtgagatgagatactcgcagattattcattacgttccctttctttgtgaggtcgagtctgtcctgaagcaacaattgttagacgagagatggttcactaaaatctaatttcgtctctgcttgcgttatag

Basic information

species Arabidopsis thaliana
transcript AT5G52100.1
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT5G52100.1 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: Vv16s0100g00480.t01 (Vitis vinifera), 5'ss of exon 5
GCAACGGCATTTGGGATGAAGAGTGTGGTGTATGTACCTCGGATTAAGCCAGAGACAGTATCTGCGTTGTCTGCACTATGTGACAAGGCCACCATGgtgagcacagggtgagatgagatactcgcagattattcattacgttccctttctttgtgaggt--cgagtctgtcctgaagcaacaattgttagacgagagatggttcactaaaatctaatttcgtctctgcttgcgttatag
||||| |||||||| ||||| |||||||| ||||| ||||| || || | ||| |||||| | || || |||||| | ||||| ||||||| |||||||||||||||||||||||   ||||      || ||   ||| ||   |||||||||  |||  |||     || | ||   |  ||| ||       || |  ||   |  |      |   ||||| |            
GCAACAGCATTTGGTATGAACAGTGTGGTTTATGTGCCTCGAATCAAACTAGACACAGTAACAGCATTATCTGCATTTTGTGAAAAGGCCAGCATGgtgagcacagggtgagatggtttactttatttttgtttcctacatt---tttctttgtcgggtttcgataaaatcatcaaagcaagatt-ttgtgtaccagttcctttgatgcacggggttactgtctcag------------