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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGCCCAAAATGCTAATGCAATGTCAGCTACATTCAAGAAAACATTTCCATTATATTTCTCCCTGACTTTTGTCCCATATGTTGTTCTACACCTACAAAAAgtaagactgtccctcaatatttgccgtttcagtcttttagattcctatggtttatgcattagtcagacatgatatgtagtttctgatgccatcctacactttcatttcag

Basic information

species Arabidopsis thaliana
transcript AT5G51150.1
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT5G51150.1 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: Vv16s0039g02700.t01 (Vitis vinifera), 5'ss of exon 5
GGCCCAAAATGCTAATGCAATGTCAGCTACATTCAAGAAAACATTTCCATTATATTTCTCCCTGACTTTTGTCCCATATGTTGTTCTACACCTACAAAAAgtaagactgtccctcaatatttgccgtttcagtcttttagattcctatggtttatgcattagtcagacatgatatgtagtttctgatgccatcctacactttcatttcag-
 || || |||||||| |||   ||||||||||||| ||||||||||||  | ||||||||| |||| ||||| |||| ||||||||| ||| ||||||| |||      |||  |||   |||   ||   |  ||  |  ||||| |  ||| ||| || |   |     | |||||  |    ||    | | |  |||| |   ||  
AGCTCACAATGCTAACGCAGCATCAGCTACATTCAGGAAAACATTTCCGCTTTATTTCTCCTTGACATTTGTACCATTTGTTGTTCTGCACTTACAAAAGgta----cctcctccaaaggttgtttttgttgatttcaaatttcctgt--tttgtgcttttgcttgg---aagatgtaactg--aattgtgtgcaatgcttttaaaccatc
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|47831840|gb|CK121524.1|CK121524
EST:     TATATTTCTCCCTGACTTTTGTCCCATATGTTGTTCTACACCTACAAAAA                         TTCATGGCTTCTCCTTACCGGACATCTTGGCTTGCAATCAGAGATTCAGTT
genomic: TATATTTCTCCCTGACTTTTGTCCCATATGTTGTTCTACACCTACAAAAAgtaagactgt ... ttcatttcagTTCATGGCTTCTCCTTACCGGACATCTTGGCTTGCAATCAGAGATTCAGTT