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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTCATGCACATTGCAGCTGCAACCGAGATTACTTCGAGGCTAATCCCTAGTTTGAAAAATTTGCATAGCTCTTTGGAATCTAAGgtgactcatttgatgtagtcactaaattgcaatattttaagatgatacttgctctgacctaaatggtgtcagggaacactcttgacctcagttcaatgtg...

Basic information

species Arabidopsis thaliana
transcript AT5G50950.2
intron # 5
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116422670|gb|EG465262.1|EG465262
EST:     CGAGGCTAATCCCTAGTTTGAAAAATTTGCATAGCTCTTTGGAATCTAAG                         TCCTTCGAGTTTAAAGATATAGTGAAAATCGGAAGAACTCATACTCAAGAT
genomic: CGAGGCTAATCCCTAGTTTGAAAAATTTGCATAGCTCTTTGGAATCTAAGgtgactcatt ... ttttggacagTCCTTCGAGTTTAAAGATATAGTGAAAATCGGAAGAACTCATACTCAAGAT
EST: gi|116467405|gb|EG509997.1|EG509997
EST:     CGAGGCTAATCCCTAGTTTGAAAAATTTGCATAGCTCTTTGGAATCTAAG                         TCCTTCGAGTTTAAAGATATAGTGAAAATCGGAAGAACTCATACTCAAGAT
genomic: CGAGGCTAATCCCTAGTTTGAAAAATTTGCATAGCTCTTTGGAATCTAAGgtgactcatt ... ttttggacagTCCTTCGAGTTTAAAGATATAGTGAAAATCGGAAGAACTCATACTCAAGAT
EST: gi|116443356|gb|EG485948.1|EG485948
EST:     CGAGGCTAATCCCTAGTTTGAAAAATTTGCATAGCTCTTTGGAATCTAAG                         TCCTTCGAGTTTAAAGATATAGTGAAAATCGGAAGAACTCATACTCAAGAT
genomic: CGAGGCTAATCCCTAGTTTGAAAAATTTGCATAGCTCTTTGGAATCTAAGgtgactcatt ... ttttggacagTCCTTCGAGTTTAAAGATATAGTGAAAATCGGAAGAACTCATACTCAAGAT
EST: gi|116456305|gb|EG498897.1|EG498897
EST:     CGAGGCTAATCCCTAGTTTGAAAAATTTGCATAGCTCTTTGGAATCTAAG                         TCCTTCGAGTTTAAAGATATAGTGAAAATCGGAAGAACTCATACTCAAGAT
genomic: CGAGGCTAATCCCTAGTTTGAAAAATTTGCATAGCTCTTTGGAATCTAAGgtgactcatt ... ttttggacagTCCTTCGAGTTTAAAGATATAGTGAAAATCGGAAGAACTCATACTCAAGAT
EST: gi|116428316|gb|EG470908.1|EG470908
EST:     CGAGGCTAATCCCTAGTTTGAAAAATTTGCATAGCTCTTTGGAATCTAAG                         TCCTTCGAGTTTAAAGATATAGTGAAAATCGGAAGAACTCATACTCAAGAT
genomic: CGAGGCTAATCCCTAGTTTGAAAAATTTGCATAGCTCTTTGGAATCTAAGgtgactcatt ... ttttggacagTCCTTCGAGTTTAAAGATATAGTGAAAATCGGAAGAACTCATACTCAAGAT