Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTGGCCAATATCAAGGTGCCTACAAGgttagaattatttgacctgatggaaatagatattttccagttaaatttctcttgttttgaccctgatctgatgctggaggtctatcatgtactcatag

Basic information

species Arabidopsis thaliana
transcript AT5G50850.1
intron # 5
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|164016936|gb|ES123772.1|ES123772
EST:     GTTGGCCAATATCAAGGTGCCTACAAG                         ATCACTAAAGGCCTTTTGGAGAAATATG
genomic: GTTGGCCAATATCAAGGTGCCTACAAGgttagaatta ... gtactcatagATCACTAAAGGCCTTTTGGAGAAATATG
EST: gi|164137578|gb|EL978552.1|EL978552
EST:     GTTGGCCAATATCAAGGTGCCTACAAG                         ATCACTAAAGGCCTTTTGGAGAAATATGGTCCTGAGAGAGTTTACGATACC
genomic: GTTGGCCAATATCAAGGTGCCTACAAGgttagaatta ... gtactcatagATCACTAAAGGCCTTTTGGAGAAATATGGTCCTGAGAGAGTTTACGATACC
EST: gi|116443796|gb|EG486388.1|EG486388
EST:     GTTGGCCAATATCAAGGTGCCTACAAG                         ATCACTAAAGGCCTTTTGGAGAAATATGGTCCTGAGAGAGTTTACGATACC
genomic: GTTGGCCAATATCAAGGTGCCTACAAGgttagaatta ... gtactcatagATCACTAAAGGCCTTTTGGAGAAATATGGTCCTGAGAGAGTTTACGATACC
EST: gi|125153757|gb|EL184737.1|EL184737
EST:     GGTGAAGAGGTTGGCCAATATCAAGGTGCCTACAAG                         ATCACTAAAGGCCTTTTGGAGAAATATGGT
genomic: GGTGAAGAGGTTGGCCAATATCAAGGTGCCTACAAGgttagaatta ... gtactcatagATCACTAAAGGCCTTTTGGAGAAATATGGT
EST: gi|125294944|gb|EL309029.1|EL309029
EST:     TGGCCAATATCAAGGTGCCTACAAG                         ATCACTAAAGGCCTTTTGGAGAAATATGGTCCTGAGAGAGTTTACGATACC
genomic: TGGCCAATATCAAGGTGCCTACAAGgttagaatta ... gtactcatagATCACTAAAGGCCTTTTGGAGAAATATGGTCCTGAGAGAGTTTACGATACC
EST: gi|116376958|gb|EG419550.1|EG419550
EST:     GTTGGCCAATATCAAGGTGCCTACAAG                         ATCACTAAAGGCCTTTTGGAGAAATATGGTCCTGAGAGAGTTTACGATACC
genomic: GTTGGCCAATATCAAGGTGCCTACAAGgttagaatta ... gtactcatagATCACTAAAGGCCTTTTGGAGAAATATGGTCCTGAGAGAGTTTACGATACC
EST: gi|125265385|gb|EL279470.1|EL279470
EST:     GTTGGCCAATATCAAGGTGCCTACAAG                         ATCACTAAAGGCCTTTTGGAGAAATATGGT
genomic: GTTGGCCAATATCAAGGTGCCTACAAGgttagaatta ... gtactcatagATCACTAAAGGCCTTTTGGAGAAATATGGT