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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGGAGGCCAATGCAATGGAAAGAATTCGATGTTTTCTTTATGAGAACAACAAAAAGTCTCCTGTTTTGGTACCAAGAGTTCTGCGAGATATGGTGACTAAgtaagtgttcttacttttgcatatcatatacctgattggttaatgtgataatgtttaaggccttctctagatggagcctctgctgtcatttaatggcatactcacatcttaaactacaatttttttttatcatttttgcttcgggtgatacttaccatatgaacaatcatgatttcctcag

Basic information

species Arabidopsis thaliana
transcript AT5G50330.2
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT5G50330.2 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: Vv17s0000g10260.t01 (Vitis vinifera), 5'ss of exon 6
GGGAGGCCAATGCAATGGAAAGAATTCGATGTTTTCTTTATGAGAACAACAAAAAGTCTCCTGTTTTGGTACCAAGAGTTCTGCGAGATATGGTGACTAAgtaagtgttcttacttttgcatatcatatacctgattggttaatgtgataatgtttaaggccttctctagatggagcctctgctgtcatttaatggcatactcacatcttaaactacaatttttttttatcatttttgcttcgggtgatacttaccatatgaacaatcatgatttcctcag
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GGGAGGCTGATGCAATGGAAAGAATAAAACGTTTTTTGTATGAGAATAACAAAAAGCGTCCTGTTTTGGTGCCACGGGTAATACGTGATATGGTGACTAGgtatgtaatc---attcagcaatt--ttttccttattg--taatctaa--acttgcaaag-----ttaaactaggatctcttttttcagtccataat---ttgagatttcttggtac----------------------------------------------------------------