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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTGGTGAATTTACATCTCCGAATCAAGAGCGTTTCCATCACTACAAGgtgagtagtatatttctgtgtgttagccagtccagtccattagtttttttatttctcatttttttttttatcttggggttggtttaatttatag

Basic information

species Arabidopsis thaliana
transcript AT5G50310.1
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT5G50310.1 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: GLYMA06G18170.1 (Glycine max), 5'ss of exon 5
GTGGTGAATTTACATCTCCGAATCAAGAGCGTTTCCATCACTACAAGgtgagtagtatatttctgtgtgttagcca---gtccagtccattagtttttttatttctcatttttttttttatcttggggttggtttaatttatag----------------
||||||| ||||||||||| || |||||||| || |||||||||||||| |     | ||| |  ||  || |  |   | | ||   |  ||  | |   ||  |   ||   |||| |   |  ||||   ||| ||| | |                
GTGGTGAGTTTACATCTCCAAACCAAGAGCGGTTTCATCACTACAAGgttaagctcacattgccttgcttttgatatgcgacgagattacaagaatgtggtttggtgtattggattttgactatttggttatgttattttttggattttgatttgtttag

upper sequence: AT5G50310.1 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: GLYMA04G36770.1 (Glycine max), 5'ss of exon 5
GTGGTGAATTTACATCTCCGAATCAAGAGCGTTTCCATCACTACAAGgtgagtagtatatttctgtgtgttagcca-gtccagtccattagtttttttatttctcatttt--tttttttatcttggggttgg--tttaatttatag--
||||||| ||||| ||||| || |||||||| || ||||||||||||||       | |||    ||  || |  | ||   |   ||  | |||  | | |   |||||   | |||  |  ||    |||  ||| |||| |    
GTGGTGAGTTTACGTCTCCAAACCAAGAGCGGTTTCATCACTACAAGgtttagctcacattctcttgcttttgttatgtgacgagaatgtggtttggtgtattggattttgactatttggtgatgtttatggatttttatttgtttag

upper sequence: AT5G50310.1 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: Vv17s0000g10130.t01 (Vitis vinifera), 5'ss of exon 5
GTGGTGAATTTACATCTCCGAATCAAGAGCGTTTCCATCACTACAAGgtgag-----tagtatatttctgtgtgtt-------agccagtccagtccattagtttttttatttctcatttttttttt-tatcttggggtt--ggtttaatttatag----------------------
||||||| ||||| || |||||||||||| | |||||||||||||||||  |     |   || |||||   | ||       |  || |  |||  |||  |  ||  | |  |  || | ||| | ||  ||| |||   ||||  |   ||                        
GTGGTGAGTTTACGTCCCCGAATCAAGAGTGCTTCCATCACTACAAGgtacgacacttgccatgtttcttcttattttgaagaaaacaatgtagtttattgttcattggagtcttggttgtgtttctataatttgtggtcaaggttagaacaatgcatttgctattttgctgttgcag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|124732645|gb|EH824047.1|EH824047
EST:     CTCCGAATCAAGAGCGTTTCCATCACTACAAG                         GACTTTTGGATGCTGGACGTGAAAACTAACCAATGGGAGCAGTTGAATTTG
genomic: CTCCGAATCAAGAGCGTTTCCATCACTACAAGgtgagtagta ... taatttatagGACTTTTGGATGCTGGACGTGAAAACTAACCAATGGGAGCAGTTGAATTTG
EST: gi|164060945|gb|ES063156.1|ES063156
EST:     GTGGTGAATTTACATCTCCGAATCAAGAGCGTTTCCATCACTACAAG                         GACTTTTGGATGCTGGACGTGAAAACTAACC
genomic: GTGGTGAATTTACATCTCCGAATCAAGAGCGTTTCCATCACTACAAGgtgagtagta ... taatttatagGACTTTTGGATGCTGGACGTGAAAACTAACC