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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CATTAAAGTTGGTGATGTGGCACTACCGGTTGTACCGGGAGTAGCAGGTGGTGAAGGTTGCTCTATTCATGGCGGATGTGCATCATGCCCATATATGAAGgtcatttattgctttatcatcattcatttgatatagatcgctaaatgaatctatttgctccatcaaactcaaagcttgtgtgataatgcag

Basic information

species Arabidopsis thaliana
transcript AT5G50210.1
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT5G50210.1 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: LOC_Os12g19304.2 (Oryza sativa), 5'ss of exon 5
CATTAAAGTTGGTGATGT-GGCACTACCGGT--TGTACCGGGAGTAGCAGGTGGTGAAGGTTGCTCTATTCATGGCGGATGTGCATCATGCCCATATATGAAGgtcatttattgctttat---catcattcatttgatatagatcgctaaatgaatctatttgctccatcaaactcaaagcttgtgtgata-atgcag--------
    | ||||  |||| | | || |    ||  ||| || || ||      ||| |||||||||||||| ||||| || || || ||||||||||| ||||||||   |  |   |  ||    ||  || |||| |  ||      |  || |   ||||      | ||     ||   ||||   | | ||  |         
---AACAGTTACTGATTTAGACAATGTTAGTGTTGTTCCTGGTGTGAGTTCTGGCGAAGGTTGCTCTATACATGGGGGCTGCGCTTCATGCCCATACATGAAGgttggtggtgattaaatatatattgtttattt-acgtaagcttttcgattatgttattgaaatgaacatgt--aagctttgttcaagacatctatatacatcc
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86076696|gb|DR372453.1|DR372453
EST:     GATGTGCATCATGCCCATATATGAAG                         ATGAACTCGCTTAGCTCGCTCTTGAAAGTTTGCCACAAACTACCTGACTTG
genomic: GATGTGCATCATGCCCATATATGAAGgtcatttatt ... gataatgcagATGAACTCGCTTAGCTCGCTCTTGAAAGTTTGCCACAAACTACCTGACTTG