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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CGCCTATAGCTTTGCAATAGTTCTTTGGGAGCTTTTACACAATAAATTGCCTTTTGAGGGAATGTCAAATCTCCAAGCAGCATATGCAGCAGCCTTCAAAgtgtgtaacactgtcttgttttgcttttgattttcgctgaactttattctctttgttttgacatgtttcttatacag

Basic information

species Arabidopsis thaliana
transcript AT5G50180.1
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT5G50180.1 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: GLYMA06G18730.1 (Glycine max), 5'ss of exon 5
CGCCTATAGCTTTGCAATAGTTCTTTGGGAGCTTTTACACAATAAATTGCCTTTTGAGGGAATGTCAAATCTCCAAGCAGCATATGCAGCAGCCTTCAAAgtg-------tgtaacactgtcttgttttgcttttgattttcgctgaactttattctctttgttttgacatgtttcttata-cag-----------------------------
 || ||||| |||||||| ||  | |||||||| |||||||| ||| | |||||||| || |||||||| || || ||||||||||| |||||||| || ||          ||   || |      ||| | |  | | | | |   ||| | ||  | ||| || |  | || | |||| | |                             
TGCTTATAGTTTTGCAATTGTGTTGTGGGAGCTCTTACACAACAAAGTTCCTTTTGAAGGCATGTCAAACCTTCAGGCAGCATATGCTGCAGCCTTTAAGgtaaaaagatcatatgcctattacaccttgttatctaatattgttt--cttaagtcaatctgtcttaaactattacatatagctgataacttaaagtgcttcttttggttttag

upper sequence: AT5G50180.1 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: GLYMA04G36210.1 (Glycine max), 5'ss of exon 5
CGCCTATAGCTTTGCAATAGTTCTTTGGGAGCTTTTACACAATAAATTGCCTTTTGAGGGAATGTCAAATCTCCAAGCAGCATATGCAGCAGCCTTCAAAgtgtgtaa--cactgtcttgtt-----ttgcttttgattttcgctgaactttattctctttgttttgacatgtttcttatacag--------------------------------
 || ||||| |||||||| ||  | |||||||| |||||||| ||| | |||||||| || |||||||| || || ||||||||||| |||||||| || ||    |   ||    ||| ||     ||| | |  | | | | |   ||| | ||  | ||| |||     | | | ||| ||                                
TGCTTATAGTTTTGCAATTGTGTTGTGGGAGCTCTTACACAACAAAGTTCCTTTTGAAGGCATGTCAAACCTTCAGGCAGCATATGCTGCAGCCTTTAAGgtaaaaagatcatatgcttattaaaccttgttatctaatattgttt--cttaagtcaatctgtcttgtacactatttcatatagctgataacttaaagtgcttctggtggtttcag