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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATTAACAGAGACTGTGATCTTATGGCTTTCTGGAGACCAGAGCTTTTGGGATGACATTGAGGAAGGTCCTCGACCTTTGGGACCTCTTGGCCTACGGCAGgtttgtacactcattcttgcttctgtatatgtatattcagcgagcatcgaaattgttgtgtacctttgttaacaaacaacctgcatctgtcacag

Basic information

species Arabidopsis thaliana
transcript AT5G49830.1
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT5G49830.1 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: GLYMA08G23840.1 (Glycine max), 5'ss of exon 6
ATTAACAGAGACTGTGATCTTATGGCTTTCTGGAGACCAGAGCTTTTGGGATGACATTGAGGAAGGTCCTCGACCTTTGGGACCTCTTGGCCTACGGCAGgtttgtacactcattcttgctt-ctgtat--------atgtatattcag---cgagcatcga-aattgttgtgtacctttgttaacaaacaacctgcatctgtcacag-----------------------------------------------------------------------
| | ||||| ||||| || || |||||||| | ||||||||||||||||||||| ||||||||||| ||  | ||||| || || ||||| || |  ||||| || | | |     ||| ||  | |||        || |   || |     |   |  |  || |||| |  |||  | |    ||| |      |  ||   ||                                                                        
ACTTACAGAAACTGTTATGTTGTGGCTTTCAGAAGACCAGAGCTTTTGGGATGATATTGAGGAAGGGCCAAGGCCTTTAGGTCCCCTTGGTCTTCAACAGgtatg-atattggaatttgtttattatatcattcatgattttcttttaattttggttactggtaactgttataaacccatatgccaaaatagagaagaattgatgcaaattttccacggttgaaccttgtgaaatgcaaagttcattatggccttataattttttcttatattgtgcag

upper sequence: AT5G49830.1 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: GLYMA07G00570.2 (Glycine max), 5'ss of exon 7
ATTAACAGAGACTGTGATCTTATGGCTTTCTGGAGACCAGAGCTTTTGGGATGACATTGAGGAAGGTCCTCGACCTTTGGGACCTCTTGGCCTACGGCAGgtttgtacactcattcttgctt-ctgtat-at--gtatattcagcgag--catcga-aattgttgtgtacctttgttaacaaaca-acctgcatctgtcacag
| | ||||| |||||  | || |||||||| | ||||||||||||||||||||| ||||||||||| ||  | ||||| || || ||||| || |  ||||| || | | |     ||| ||  | ||| ||   | | || |  |||   |  |  || ||||    |||  | |    ||||| |   | || | |  |  
ACTTACAGAAACTGTTGTGTTGTGGCTTTCAGAAGACCAGAGCTTTTGGGATGATATTGAGGAAGGGCCAAGGCCTTTAGGTCCCCTTGGTCTTCAACAGgtatg-atattggaatttgtttattatatcattaatgttttaattgaggttactggtaactgttagaaacccatatgccaaaacagaaaagaatttatgcc--

upper sequence: AT5G49830.1 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: Vv09s0018g01920.t01 (Vitis vinifera), 5'ss of exon 5
ATTAACAGAGACTGTGATCTTATGGCTTTCTGGAGACCAGAGCTTTTGGGATGACATTGAGGAAGGTCCTCGACCTTTGGGACCTCTTGGCCTACGGCAGgtttgt-acactcattcttgct--tctgtatatg---tatattcagcgagcatc-gaaattgttgtgtacctttgttaacaaacaacctgcatctgtcacag
| | || || ||||| ||  |||||||||||| |||||| |||||||||||||| ||||||||||| ||  | ||||| || |||||||| || |  ||||||| | | | | || |    |  |||| || ||   | | |    ||||   |  ||| ||   |     |   ||   |||  |  || |          
ACTCACTGAAACTGTCATTATATGGCTTTCTGAAGACCAAAGCTTTTGGGATGATATTGAGGAAGGGCCGAGGCCTTTAGGTCCTCTTGGTCTTCAACAGgtttttgaaattgatccccattgatctgcatctgctctgtttctgtcgagttcctaaaactgacctaatattcacttgctaaatcatgtgtag---------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86087532|gb|DR383291.1|DR383291
EST:     ATGACATTGAGGAAGGTCCTCGACCTTTGGGACCTCTTGGCCTACGGCAG                         CTGTATTTGGACATGAAGTTTGTCATATGCTTTGCATCCCAAGGTCGCTAC
genomic: ATGACATTGAGGAAGGTCCTCGACCTTTGGGACCTCTTGGCCTACGGCAGgtttgtacac ... tctgtcacagCTGTATTTGGACATGAAGTTTGTCATATGCTTTGCATCCCAAGGTCGCTAC