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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAGCCTCGACTTGTTGCTCTTACGTGCTTGTACCTGGCATCTAAAGCTGAAGAAAGCATAGTGCAGGCCAGGAATCTTGTTTTTTACATCAAAAGATTGTgtaatatcttcttcttctgtttttttatttttcaaatcatgagagtacctccccttcaatatgcttttttttgacatatcgacgacaacggttcttatatctttgcag

Basic information

species Arabidopsis thaliana
transcript AT5G48640.1
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT5G48640.1 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: GLYMA08G46170.2 (Glycine max), 5'ss of exon 6
GAGCCTCGACTTGTTGCTCTTACGTGCTTGTACCTGGCATCTAAAGCTGAAGAAAGCATAGTGCAGGCCAGGAATCTTGTTTTTTACATCAAAAGATTGTgtaatatcttcttcttctgtttttttatttttcaaatcatgagagtacctccccttcaatatgctt--ttttttgacatatcgacgacaacggttcttatatctttgcag---------------------------------------
|| || ||  | || ||||  || ||||||||||||||||| ||||| |||||||||| |||||||||  ||  |||||| |||||||| |||| ||| |||||  | ||    |    ||||||  |  ||    || ||        |   ||| ||  ||  |  ||| ||  || ||      ||   | | |||||| |    |                                        
GATCCACGCTTGGTAGCTCCAACATGCTTGTACCTGGCATCAAAAGCAGAAGAAAGCACAGTGCAGGCTCGGCTTCTTGTATTTTACATTAAAAAATTATgtaagctgttagcttataattttttcttaatttgcttcgtgttgacttttgatcttaaaagtgaataatttgtttccaaatttgtctcat--gctattatatttcattatttcctttctatgctgaaagcacagtgattttgaatgcag

upper sequence: AT5G48640.1 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: GLYMA18G33140.1 (Glycine max), 5'ss of exon 5
GAGCCTCGACTTGTTGCTCTTACGTGCTTGTACCTGGCATCTAAAGCTGAAGAAAGCATAGTGCAGGCCAGGAATCTTGTTTTTTACATCAAAAGATTGTgtaa--tatcttcttcttctgtttttttatttttcaaatcatgagagtacctccccttcaatatg-----cttttttttgacata--tcgacgacaacggttcttatatctttgcag------------------------
|| || ||  | || ||||  || ||||||||||||||||| ||||| |||||||||| |||||||||  ||  |||||| |||||||| |||| ||| |||||  | | ||    |     ||| |  | |||    |||||  |    ||   | | ||  ||      || ||| |||  |      | |  |     | |  | ||| ||| |                        
GATCCACGTTTGGTAGCTCCAACATGCTTGTACCTGGCATCAAAAGCAGAAGAAAGCACAGTGCAGGCTCGGCTTCTTGTATTTTACATTAAAAAATTATgtaagctgtgttagcttataaatttgtcttattttgcttcatgttaacttctgatcgtaaaagtgaataatttgtttctgaagttgtctcatgctattatatttcctttctatgctgaaagcacagtgattttgtatgcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86054344|gb|DR350101.1|DR350101
EST:     AGAAAGCATAGTGCAGGCCAGGAATCTTGTTTTTTACATCAAAAGATTGT                         ATCCTGATGAGTACAACAAATATGAACTAAAGGATATATTAGGAATGGAGA
genomic: AGAAAGCATAGTGCAGGCCAGGAATCTTGTTTTTTACATCAAAAGATTGTgtaatatctt ... atctttgcagATCCTGATGAGTACAACAAATATGAACTAAAGGATATATTAGGAATGGAGA
EST: gi|164181775|gb|ES143761.1|ES143761
EST:     AGAAAGCATAGTGCAGGCCAGGAATCTTGTTTTTTACATCAAAAGATTGT                         ATCCTGATGAGTACAACAAATATGAACTAAAGGATA
genomic: AGAAAGCATAGTGCAGGCCAGGAATCTTGTTTTTTACATCAAAAGATTGTgtaatatctt ... atctttgcagATCCTGATGAGTACAACAAATATGAACTAAAGGATA
EST: gi|163973880|gb|ES147460.1|ES147460
EST:     TTTACATCAAAAGATTGT                         ATCCTGATGAGTACAACAAATATGAACTAAAGGATATATTAGGAATGGAGA
genomic: TTTACATCAAAAGATTGTgtaatatctt ... atctttgcagATCCTGATGAGTACAACAAATATGAACTAAAGGATATATTAGGAATGGAGA
EST: gi|86086425|gb|DR382184.1|DR382184
EST:     AGAAAGCATAGTGCAGGCCAGGAATCTTGTTTTTTACATCAAAAGATTGT                         ATCCTGATGAGTACAACAAATATGAACTAAAGGATATATTAGGAATGGAGA
genomic: AGAAAGCATAGTGCAGGCCAGGAATCTTGTTTTTTACATCAAAAGATTGTgtaatatctt ... atctttgcagATCCTGATGAGTACAACAAATATGAACTAAAGGATATATTAGGAATGGAGA