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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGGAAACTTACTGATGGAACTGTATTCGATTCGAGTTTTGAAAGGGGTGATCCGTTTGAGTTTAAATTAGGAAGTGGTCAGGTTATCAAAGgtagtgacttgcttttggcttttgagtatctcttttcttttaacattttcttaattccttcaatggtaattttcggttttgttgcag

Basic information

species Arabidopsis thaliana
transcript AT5G48580.1
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT5G48580.1 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: GLYMA03G21680.1 (Glycine max), 5'ss of exon 4
GGGAAACTTACTGATGGAACTGTATTCGATTCGAGTTTTGAAAGGGGTGATCCGTTTGAGTTTAAATTAGGAAGTGGTCAGGTTATCAAAGgta--------gtgacttgcttttggcttttgagtatctcttttcttttaacattttcttaattc-cttcaatggtaattttcggttttgttgcag----
|| ||||| |||||||||||||| |||||||| || ||||||||   | ||||  |||| ||| |  | || | |||||| || ||||||||||         | |    |||  | || || | | |||  |||| ||    ||     | | |  || |  || |  ||| |   |||  || |     
GGAAAACTCACTGATGGAACTGTTTTCGATTCTAGCTTTGAAAGAAATAATCCAATTGAATTTGAGCTTGGTACTGGTCAAGTGATCAAAGgtatgttgtgcataaacaacttcagtctgttaattttctggtttcattacctataaaagtgactagctgctgtgcttgtttgcttatttaatgaaaatga

upper sequence: AT5G48580.1 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: GLYMA16G10750.1 (Glycine max), 5'ss of exon 4
GGGAAACTTACTGATGGAACTGTATTCGATTCGAGTTTTGAAAGGGGTGATCCGTTTGAGTTTAAATTAGGAAGTGGTCAGGTTATCAAAGgta-gtgacttgcttttggcttttgagtatctcttttcttttaacattttcttaattccttcaatggtaattttcggttttgttgcag-------------------
|| ||||| |||||||||||||| |||||||| || ||||||||   | ||||  |||| ||| |  | || | |||||| || |||||||||| ||             ||| ||    | || || | | ||| | |  ||      || |  || |  ||| |   ||| ||| |                    
GGAAAACTCACTGATGGAACTGTTTTCGATTCTAGCTTTGAAAGAAATAATCCAATTGAATTTGAGCTTGGTACTGGTCAAGTGATCAAAGgtatgttgtgcataaacaacttctgg---tttcattacctataaaagtgactag----ctgctgtgcttgtttacttatttattgaaaatgaaagtaagtagataaa

upper sequence: AT5G48580.1 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: Vv00s0260g00060.t01 (Vitis vinifera), 5'ss of exon 4
GGGAAACTTACTGATGGAACTGTATTCGATTCGAGTTTTGAAAGGGGTGATCCGTTTGAGTTTAAATTAGGAAGTGGTCAGGTTATCAAAGgta-gtgacttgcttttggcttttgagtatctcttttctt--ttaacattttcttaattccttcaatgg-taattttcggttt---tgttgcag------
|||||||| || ||||||||||| || ||||| ||||||||||||||||| ||  |||||||| || | || ||||| || || || ||||||| || |    | |     |  ||  |||    | | ||   ||    ||| |||   |  | ||||| |||      || |   | |||||       
GGGAAACTCACAGATGGAACTGTTTTTGATTCCAGTTTTGAAAGGGGTGACCCAATTGAGTTTGAACTTGGTAGTGGCCAAGTAATTAAAGgtatgtaaagaacatgaacttactgtttatacaatgttttacctatttcttttttaccccagtaaatggataaaaaagtgtatgagtattgcatgggtaa

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116482915|gb|EG525507.1|EG525507
EST:     AAGGGGTGATCCGTTTGAGTTTAAATTAGGAAGTGGTCAGGTTATCAAAG                         GTTGGGATCAAGGGTTTGCTAGGAGCGTGTGTAGGGTGAGAAGAGGAAGTT
genomic: AAGGGGTGATCCGTTTGAGTTTAAATTAGGAAGTGGTCAGGTTATCAAAGgtagtgactt ... tttgttgcagGTTGGGATCAAGG-TTTGCTAGGAGCGTGTGTAGG-TGAGAAGAGGAAGTT
EST: gi|86081492|gb|DR377249.1|DR377249
EST:     AAGGGGTGATCCGTTTGAGTTTAAATTAGGAAGTGGTCAGGTTATCAAAG                         GTTGGGATCAAGGTTTGCTAGGAGCGTGTGTAGGTGAGAAGAGGAAGTTAA
genomic: AAGGGGTGATCCGTTTGAGTTTAAATTAGGAAGTGGTCAGGTTATCAAAGgtagtgactt ... tttgttgcagGTTGGGATCAAGGTTTGCTAGGAGCGTGTGTAGGTGAGAAGAGGAAGTTAA
EST: gi|164087397|gb|ES049750.1|ES049750
EST:     AAGGGGTGATCCGTTTGAGTTTAAATTAGGAAGTGGTCAGGTTATCAAAG                         GTTGGGATCAAGGTTTGCTAGGAG
genomic: AAGGGGTGATCCGTTTGAGTTTAAATTAGGAAGTGGTCAGGTTATCAAAGgtagtgactt ... tttgttgcagGTTGGGATCAAGGTTTGCTAGGAG
EST: gi|164194397|gb|ES057421.1|ES057421
EST:     AAGGGGTGATCCGTTTGAGTTTAAATTAGGAAGTGGTCAGGTTATCAAAG                         GTTGGGATCAAGGTTTGCTAGG
genomic: AAGGGGTGATCCGTTTGAGTTTAAATTAGGAAGTGGTCAGGTTATCAAAGgtagtgactt ... tttgttgcagGTTGGGATCAAGGTTTGCTAGG
EST: gi|124974150|gb|EL047729.1|EL047729
EST:     AAGGGGTGATCCGTTTGAGTTTAAATTAGGAAGTGGTCAGGTTATCAAAG                         GTTGGGATCAAGGTTTGCTAGGAGCGTGTGTAGGTGAGAAGAGGAAGTTAA
genomic: AAGGGGTGATCCGTTTGAGTTTAAATTAGGAAGTGGTCAGGTTATCAAAGgtagtgactt ... tttgttgcagGTTGGGATCAAGGTTTGCTAGGAGCGTGTGTAGGTGAGAAGAGGAAGTTAA
EST: gi|124722350|gb|EH813752.1|EH813752
EST:     AAGGGGTGATCCGTTTGAGTTTAAATTAGGAAGTGGTCAGGTTATCAAAG                         GTTGGGATCAAGGTTTGCTAGG
genomic: AAGGGGTGATCCGTTTGAGTTTAAATTAGGAAGTGGTCAGGTTATCAAAGgtagtgactt ... tttgttgcagGTTGGGATCAAGGTTTGCTAGG
EST: gi|164153427|gb|ES022640.1|ES022640
EST:     AAGGGGTGATCCGTTTGAGTTTAAATTAGGAAGTGGTCAGGTTATCAAAG                         GTTGGGATCAAGGTTTG
genomic: AAGGGGTGATCCGTTTGAGTTTAAATTAGGAAGTGGTCAGGTTATCAAAGgtagtgactt ... tttgttgcagGTTGGGATCAAGGTTTG
EST: gi|164053533|gb|ES115447.1|ES115447
EST:     AGGGGTTGATCCGTTTGAGTTTAAATTAGGAAGTGGTCAGGTTATCAAAG                         GTTGGGATCAAGGTTTG
genomic: AGGGGT-GATCCGTTTGAGTTTAAATTAGGAAGTGGTCAGGTTATCAAAGgtagtgactt ... tttgttgcagGTTGGGATCAAGGTTTG
EST: gi|164182996|gb|EL988568.1|EL988568
EST:     AAGGGGTGATCCGTTTGAGTTTAAATTAGGAAGTGGTCAGGTTATCAAAG                         GTTGGGATCAAGGTT
genomic: AAGGGGTGATCCGTTTGAGTTTAAATTAGGAAGTGGTCAGGTTATCAAAGgtagtgactt ... tttgttgcagGTTGGGATCAAGGTT
EST: gi|116469680|gb|EG512272.1|EG512272
EST:     AAGGGGTGATCCGTTTGAGTTTAAATTAGGAAGTGGTCAGGTTATCAAAG                         GTTGGGATCAAGGTTTGCTAGGAGCGTGTGTAGGTGAGAAGAGGAAGTTAA
genomic: AAGGGGTGATCCGTTTGAGTTTAAATTAGGAAGTGGTCAGGTTATCAAAGgtagtgactt ... tttgttgcagGTTGGGATCAAGGTTTGCTAGGAGCGTGTGTAGGTGAGAAGAGGAAGTTAA
EST: gi|164099814|gb|ES054925.1|ES054925
EST:     AAGGGGTGATCCGTTTGAGTTTAAATTAGGAAGTGGTCAGGTTATCAAAG                         GTTGGGATCAAGGTTTGCTAGGAG
genomic: AAGGGGTGATCCGTTTGAGTTTAAATTAGGAAGTGGTCAGGTTATCAAAGgtagtgactt ... tttgttgcagGTTGGGATCAAGGTTTGCTAGGAG
EST: gi|125103707|gb|EL158014.1|EL158014
EST:     AAGGGGTGATCCGTTTGAGTTTAAATTAGGAAGTGGTCAGGTTATCAAAG                         GTTGGGATCAAGGT
genomic: AAGGGGTGATCCGTTTGAGTTTAAATTAGGAAGTGGTCAGGTTATCAAAGgtagtgactt ... tttgttgcagGTTGGGATCAAGGT
EST: gi|125071389|gb|EL136454.1|EL136454
EST:     AAGGGGTGATCCGTTTGAGTTTAAATTAGGAAGTGGTCAGGTTATCAAAG                         GTTGGGATCAAGGTTTGCTAGGAGCGTGTGTAGGTGAGAAGAGGAAGT
genomic: AAGGGGTGATCCGTTTGAGTTTAAATTAGGAAGTGGTCAGGTTATCAAAGgtagtgactt ... tttgttgcagGTTGGGATCAAGGTTTGCTAGGAGCGTGTGTAGGTGAGAAGAGGAAGT
EST: gi|125185702|gb|EL200656.1|EL200656
EST:     GGGTGATCCGTTTGAGTTTAAATTAGGAAGTGGTCAGGTTATCAAAG                         GTTGGGATCAAGGTTTGCTAGGAGCGTGTGTAGGTGAGAAGAGGAAGTTAA
genomic: GGGTGATCCGTTTGAGTTTAAATTAGGAAGTGGTCAGGTTATCAAAGgtagtgactt ... tttgttgcagGTTGGGATCAAGGTTTGCTAGGAGCGTGTGTAGGTGAGAAGAGGAAGTTAA
EST: gi|86084981|gb|DR380740.1|DR380740
EST:     AAGGGGTGATCCGTTTGAGTTTAAATTAGGAAGTGGTCAGGTTATCAAAG                         GTTGGGATCAAGGTTTGCTAGGAGCGTGTGTAGGTGAGAAGAGGAAGTTAA
genomic: AAGGGGTGATCCGTTTGAGTTTAAATTAGGAAGTGGTCAGGTTATCAAAGgtagtgactt ... tttgttgcagGTTGGGATCAAGGTTTGCTAGGAGCGTGTGTAGGTGAGAAGAGGAAGTTAA
EST: gi|124937985|gb|EL014659.1|EL014659
EST:     TTAGGAAGTGGTCAGGTTATCAAAG                         GTTGGGATCAAGGTTTGCTAGGAGCGTGTGTAGGTGAGAAGAGGAAGTTAA
genomic: TTAGGAAGTGGTCAGGTTATCAAAGgtagtgactt ... tttgttgcagGTTGGGATCAAGGTTTGCTAGGAGCGTGTGTAGGTGAGAAGAGGAAGTTAA