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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CAATGATGGGATTCTACTTCGCAATCACATCCACAGGATTCTCAAAAAGCATTTCCGTGATAAGCCTTACTATGTTGACCTTGTTGATTTGTTTAATGAGgtaatctgttttggcagatctactattctcttttccacttttgatattttatcctcagtctattattccatttgctgtctag

Basic information

species Arabidopsis thaliana
transcript AT5G47770.1
intron # 5
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|125002503|gb|EL074772.1|EL074772
EST:     TTGATTTGTTTAATGAG                         GTTGAGTTAGCAAACAGCTTGTGGCCAGATGATAGATTTGATCACCACCTT
genomic: TTGATTTGTTTAATGAGgtaatctgtt ... tgctgtctagGTTGAGTT-GCAAACAGCTTGTGGCCAGATGATAGATTTGATCACCACCTT
EST: gi|125105698|gb|EL159382.1|EL159382
EST:     ATTTCCGTGATAAGCCTTACTATGTTGACCTTGTTGATTTGTTTAATGAG                         GTTGAGTTGCAAACAGCTTGTGG
genomic: ATTTCCGTGATAAGCCTTACTATGTTGACCTTGTTGATTTGTTTAATGAGgtaatctgtt ... tgctgtctagGTTGAGTTGCAAACAGCTTGTGG