1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
AGAGAGCAAGGAATACAAGAAATCCATCAGCAAATTGGTGAGGTTAACGAGATATTCAAAGATCTTGCGGTTCTGGTTAACGATCAAGGAGTCATGATAGgtaaagacaatctattaaacttaattagaacatgcccttgaagctgcagttagagaactcacttttttctttcttgcag
species | Arabidopsis thaliana |
transcript | AT5G46860.1 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: ATATTCAAAGGATCTTGCGGTTCTGGTTAACGATCAAGGAGTCATGATAG ATGATATTGGTACTCACATTGACAACTCCCGTGCTGCAACTTCACAAGGAAEST: gi|86038429|gb|DR334184.1|DR334184
genomic: ATATTCAAAG-ATCTTGCGGTTCTGGTTAACGATCAAGGAGTCATGATAGgtaaagacaa ... tttcttgcagATGATATTGGTACTCACATTGACAACTCCCGTGCTGCAACTTCACAAGGAA
EST: GATATTCAAAGATCTTGCGGTTCTGGTTAACGATCAAGGAGTCATGATAG ATGATATTGGTACTCACATTGACAACTCCCGTGCTGCAACTTCACAAGGAAEST: gi|152033843|gb|BP817504.2|BP817504
genomic: GATATTCAAAGATCTTGCGGTTCTGGTTAACGATCAAGGAGTCATGATAGgtaaagacaa ... tttcttgcagATGATATTGGTACTCACATTGACAACTCCCGTGCTGCAACTTCACAAGGAA
EST: GATATTCAAAGATCTTGCGGTTCTGGTTAACGATCAAGGAGTCATGATAG ATGATATTGGTACTCACATTGACAACTCCCGTGCTGCAACTTCACAAGGAA
genomic: GATATTCAAAGATCTTGCGGTTCTGGTTAACGATCAAGGAGTCATGATAGgtaaagacaa ... tttcttgcagATGATATTGGTACTCACATTGACAACTCCCGTGCTGCAACTTCACAAGGAA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AGAGAGCAAGGAATACAAGAAATCCATCAGCAAATTGGTGAGGTTAACGAGATATTCAAAGATCTTGCGGTTCTGGTTAACGATCAAGGAGTCATGATAGgtaaagacaatctattaaacttaattagaacatgcccttgaagctgcagttagagaactcacttttttctttcttgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG