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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTAGAGTCATTCCTGAAAGTGTGATATTCAGTTATGGAACTATTCTTTTAGATCTTTTAAGCGGCAAACACATTCCACCTAGCCATgtatgtgcttccaatgttctaatttccttcattttatcttacttttttgtcaattgccgaggattttatttgtggtcttcttatctgaattggtggtgatgtttcatatcag

Basic information

species Arabidopsis thaliana
transcript AT5G46570.1
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT5G46570.1 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: LOC_Os10g42110.1 (Oryza sativa), 5'ss of exon 6
GTAGAGTCATTCCTGAAAGTGTGATATTCAGTTATGGAACTATTCTTTTAGATCTTTTAAGCGGCAAACACATTCCACCTAGCCATgtatgtgcttccaatgttctaatttccttcattttatcttacttttttgtcaattgccgaggattttatttgtggtcttcttatctgaattggtggtgatgtttcatatcag
| ||||||||  | || ||||||||||  || ||||||||  ||||||| |||||||| || || || ||||| || ||||||||||||||  ||||    |||  |||   | | | |||     |    | | |  ||   ||    |  |  |  |     || ||||     |     ||    |  || |   
GCAGAGTCATCGCCGAGAGTGTGATATATAGCTATGGAACAGTTCTTTTGGATCTTTTGAGTGGGAAGCACATACCTCCTAGCCATgtatg--cttc----gtttaaat---ccttacttttctcaagaaatatatatatcagcgcttctccttatcattactctcatatcctggataacactgcatctgtattt---

upper sequence: AT5G46570.1 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: GRMZM2G169080_T01 (Zea mays), 5'ss of exon 6
GTAGAGTCATTCCTGAAAGTGTGATATTCAGTTATGGAACTATTCTTTTAGATCTTTTAAGCGGCAAACACATTCCACCTAGCCATgtatg--tgcttccaatgttctaatttccttcattttatcttacttttttgtcaattgccgaggattttatttgtggtcttcttatctgaattggtg-gtgatgtttcatatcag
| ||||| ||||| || ||||||||||  || ||||||||| | || || |||||||| ||||| ||||||||||| ||||| ||||||||  |  ||    | |||| |        || ||     | | | ||  ||||| ||     |||  |     || | |     || | || || ||               
GCAGAGTAATTCCCGAGAGTGTGATATATAGCTATGGAACTGTCCTGTTGGATCTTTTGAGCGGAAAACACATTCCTCCTAGTCATgtatgcttcatttgctttttctcaagaagaatatatttctggaatctcttagcaattccctgcattttggtacaatgtttgcaatgatggactgctgtgt---------------

upper sequence: AT5G46570.1 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: GRMZM2G054634_T02 (Zea mays), 5'ss of exon 6
GTAGAGTCATTCCTGAAAGTGTGATATTCAGTTATGGAACTATTCTTTTAGATCTTTTAAGCGGCAAACACATTCCACCTAGCCATgtatgtgcttccaatgttctaatttccttcattttatcttacttttttgtcaattgccgaggattttatttgtggtcttcttatctgaattggtggtgatgtttcatatcag
| ||||| ||||| || |||||||| |  || ||||||||| | || || |||||||| ||||| ||||||||||| ||||| ||||||||  |||||       |  |||  ||||       |   ||| | |   ||  |  || | |||  |||   ||    |  ||   |||||    ||||||   || | 
GCAGAGTAATTCCGGAGAGTGTGATCTATAGCTATGGAACTGTCCTGTTGGATCTTTTGAGCGGAAAACACATTCCTCCTAGTCATgtatg--cttcc------ttgctttttttcaagaagaatatgtttctggaatatctcttagcaatttccttgca-tcacactgcctt--ttggta-caatgtttgtgatgat

upper sequence: AT5G46570.1 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: GLYMA17G16420.1 (Glycine max), 5'ss of exon 6
GTAGAGTCATTCCTGAAAGTGTGATATTCAGTTATGGAACTATTCTTTTAGATCTTTTAAGCGGCAAACACATTCCACCTAGCCATgtatgtgcttccaatgttctaatttccttcattttatcttacttttttgtcaattgccgaggattttatttgtggtcttcttatctgaattggtggtgatgtttcatatcag-
| ||  | || || || |||||||| | ||||||||||||| ||||| | ||||||||||| ||||| |||||||| || ||||||||||||         |||||||     |||| | | |       | |    |  |||      |||||||        | | ||  ||  || |       ||  || | |  
GCAGGATAATCCCAGAGAGTGTGATCTACAGTTATGGAACTGTTCTTCTGGATCTTTTAAGTGGCAAGCACATTCCTCCAAGCCATgtatgtt------gcgttctaagaaaattcagtctctgcattcatataagaacatgctttatgttttattc-----tgtttcataagacatgataa--gcattctatgttacc

upper sequence: AT5G46570.1 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: GLYMA05G06140.1 (Glycine max), 5'ss of exon 6
GTAGAGTCATTCCTGAAAGTGTGATATTCAGTTATGGAACTATTCTTTTAGATCTTTTAAGCGGCAAACACATTCCACCTAGCCATgtatgtgcttccaatgttctaatttccttcattttatcttacttttttgtcaattgccgaggattttatttgtggtcttcttatctgaattggtggtgatgtttcatatcag-
| ||  | || || || |||||||| | ||||||||||||| ||||| | |||||| |||| ||||| || ||||| || ||||||||||||         |||||||     | || | | |   | |  | |   |||      |   |||||   |  | || ||   | |     |       ||  || | |  
GCAGGATAATCCCAGAGAGTGTGATCTACAGTTATGGAACTGTTCTTCTGGATCTTCTAAGTGGCAAGCATATTCCTCCAAGCCATgtatgtt------gcgttctaacaaaatccagtctctgc-attcatataagaat------gtgctttatgctttattttgtttcataaggcattataagcattctatgttacc