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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAGATGCATACTCTACATAGATGCAGTAACCAGGAAACCATTGATCACAACTGTTGAAAGGCAACTTCTCGAACGTCATATACTTGTTGTTCTTGAAAAGgttccaatctcctattattcttgtgttggcttgcatattatccaattttagtttgtcgtagtcttactttatttctgaacatcttcag

Basic information

species Arabidopsis thaliana
transcript AT5G46210.1
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT5G46210.1 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: GLYMA05G27240.1 (Glycine max), 5'ss of exon 5
GAGATGCATACTCTACATAGATGCAGTAACCAGGAAACCATTGATCACAACTGTTGAAAGGCAACTTCTCGAACGTCATATACTTGTTGTTCTTGAAAAGgttccaatctcctattattcttgtgttggcttgcatattatccaattttagtttgtcgtagtcttactttatttctgaacatcttcag--
 |||||  |  | ||| | ||||||   || ||||||||||||||  ||||||  |||| ||||||||| ||||||||||||| ||   ||||||| |||||||  |   |  ||| ||    | |||  | | | | | |||  |   | ||| ||      || ||||| || ||      || |   
AAGATGTTTGTTGTACTTGGATGCAAGTACTAGGAAACCATTGATAGCAACTGCGGAAAAGCAACTTCTTGAACGTCATATACCTGCCATTCTTGATAAGgttctgaaaaca-atttttggatttttgtttggtaaagtttcctttgcaattttttccc--cttttctttacttttgtcttcttttacag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|125042624|gb|EL114893.1|EL114893
EST:     TTCTCGAACGTCATATACTTGTTGTTCTTGAAAAG                         GGTTTTACAACATTAATGGATGGACGTCGTACGGAGGACCTTCAGAGGATG
genomic: TTCTCGAACGTCATATACTTGTTGTTCTTGAAAAGgttccaatct ... acatcttcagGGTTTTACAACATTAATGGATGGACGTCGTACGGAGGACCTTCAGAGGATG
EST: gi|164064728|gb|ES202702.1|ES202702
EST:     GTTCTTGAAAAG                         GGTTTTACAACATTAATGGATGGACGTCGTACGGAGGACCTTCAGAGGATG
genomic: GTTCTTGAAAAGgttccaatct ... acatcttcagGGTTTTACAACATTAATGGATGGACGTCGTACGGAGGACCTTCAGAGGATG