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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CAAGAAGAGTGAACTATGGGGTTATCTTGGAAGAAATAACCAGAGGAATCAAAATGATTATGGGGAAGAAACTGCGATTGAGCCAAACGCAGAAGGGAAGgtacatgtattttctaagtttgattaaatctcagcgagatctagttcaagctcttaacatgacatatttaatgatttatatgatatttcaaacaacggttgatatctgttttttgattgttgcag

Basic information

species Arabidopsis thaliana
transcript AT5G45330.1
intron # 5
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116433931|gb|EG476523.1|EG476523
EST:     AAAATGATTATGGGGAAGAAACTGCGATTGAGCCAAACGCAGAAGGGAAG                         CCTGCATATAACAAGGATGACTTTTTTGACACAATCTCGTGCAATCAACTT
genomic: AAAATGATTATGGGGAAGAAACTGCGATTGAGCCAAACGCAGAAGGGAAGgtacatgtat ... attgttgcagCCTGCATATAACAAGGATGACTTTTTTGACACAATCTCGTGCAATCAACTT
EST: gi|116389885|gb|EG432477.1|EG432477
EST:     AAAATGATTATGGGGAAGAAACTGCGATTGAGCCAAACGCAGAAGGGAAG                         CCTGCATATAACAAGGATGACTTTTTTGACACAATCTCGTGCAATCAACTT
genomic: AAAATGATTATGGGGAAGAAACTGCGATTGAGCCAAACGCAGAAGGGAAGgtacatgtat ... attgttgcagCCTGCATATAACAAGGATGACTTTTTTGACACAATCTCGTGCAATCAACTT
EST: gi|116389861|gb|EG432453.1|EG432453
EST:     AAAATGATTATGGGGAAGAAACTGCGATTGAGCCAAACGCAGAAGGGAAG                         CCTGCATATAACAAGGATGACTTTTTTGACACAATCTCGTGCAATCAACTT
genomic: AAAATGATTATGGGGAAGAAACTGCGATTGAGCCAAACGCAGAAGGGAAGgtacatgtat ... attgttgcagCCTGCATATAACAAGGATGACTTTTTTGACACAATCTCGTGCAATCAACTT
EST: gi|116389763|gb|EG432355.1|EG432355
EST:     AAAATGATTATGGGGAAGAAACTGCGATTGAGCCAAACGCAGAAGGGAAG                         CCTGCATATAACAAGGATGACTTTTTTGACACAATCTCGTGCAATCAACTT
genomic: AAAATGATTATGGGGAAGAAACTGCGATTGAGCCAAACGCAGAAGGGAAGgtacatgtat ... attgttgcagCCTGCATATAACAAGGATGACTTTTTTGACACAATCTCGTGCAATCAACTT
EST: gi|116389824|gb|EG432416.1|EG432416
EST:     AAAATGATTATGGGGAAGAAACTGCGATTGAGCCAAACGCAGAAGGGAAG                         CCTGCATATAACAAGGATGACTTTTTTGACACAATCTCGTGCAATCAACTT
genomic: AAAATGATTATGGGGAAGAAACTGCGATTGAGCCAAACGCAGAAGGGAAGgtacatgtat ... attgttgcagCCTGCATATAACAAGGATGACTTTTTTGACACAATCTCGTGCAATCAACTT
EST: gi|116389847|gb|EG432439.1|EG432439
EST:     AAAATGATTATGGGGAAGAAACTGCGATTGAGCCAAACGCAGAAGGGAAG                         CCTGCATATAACAAGGATGACTTTTTTGACACAATCTCGTGCAATCAACTT
genomic: AAAATGATTATGGGGAAGAAACTGCGATTGAGCCAAACGCAGAAGGGAAGgtacatgtat ... attgttgcagCCTGCATATAACAAGGATGACTTTTTTGACACAATCTCGTGCAATCAACTT
EST: gi|116389931|gb|EG432523.1|EG432523
EST:     AAAATGATTATGGGGAAGAAACTGCGATTGAGCCAAACGCAGAAGGGAAG                         CCTGCATATAACAAGGATGACTTTTTTGACACAATCTCGTGCAATCAACTT
genomic: AAAATGATTATGGGGAAGAAACTGCGATTGAGCCAAACGCAGAAGGGAAGgtacatgtat ... attgttgcagCCTGCATATAACAAGGATGACTTTTTTGACACAATCTCGTGCAATCAACTT
EST: gi|116389903|gb|EG432495.1|EG432495
EST:     TGCGATTGAGCCAAACGCAGAAGGGAAG                         CCTGCATATAACAAGGATGACTTTTTTGACACAATCTCGTGCAATCAACTT
genomic: TGCGATTGAGCCAAACGCAGAAGGGAAGgtacatgtat ... attgttgcagCCTGCATATAACAAGGATGACTTTTTTGACACAATCTCGTGCAATCAACTT
EST: gi|86059877|gb|DR355634.1|DR355634
EST:     AAAATGATTATGGGGAAGAAACTGCGATTGAGCCAAACGCAGAAGGGAAG                         CCTGCATATAACAAGGATGACTTTTTTGACACAATCTCGTGCAATCAACTT
genomic: AAAATGATTATGGGGAAGAAACTGCGATTGAGCCAAACGCAGAAGGGAAGgtacatgtat ... attgttgcagCCTGCATATAACAAGGATGACTTTTTTGACACAATCTCGTGCAATCAACTT
EST: gi|116389827|gb|EG432419.1|EG432419
EST:     GAAGAAACTGCGATTGAGCCAAACGCAGAAGGGAAG                         CCTGCATATAACAAGGATGACTTTTTTGACACAATCTCGTGCAATCAACTT
genomic: GAAGAAACTGCGATTGAGCCAAACGCAGAAGGGAAGgtacatgtat ... attgttgcagCCTGCATATAACAAGGATGACTTTTTTGACACAATCTCGTGCAATCAACTT
EST: gi|116389794|gb|EG432386.1|EG432386
EST:     AAAATGATTATGGGGAAGAAACTGCGATTGAGCCAAACGCAGAAGGGAAG                         CCTGCATATAACAAGGATGACTTTTTTGACACAATCTCGTGCAATCAACTT
genomic: AAAATGATTATGGGGAAGAAACTGCGATTGAGCCAAACGCAGAAGGGAAGgtacatgtat ... attgttgcagCCTGCATATAACAAGGATGACTTTTTTGACACAATCTCGTGCAATCAACTT
EST: gi|116433932|gb|EG476524.1|EG476524
EST:     AAAATGATTATGGGGAAGAAACTGCGATTGAGCCAAACGCAGAAGGGAAG                         CCTGCATATAACAAGGATGACTTTTTTGACACAATCTCGTGCAATCAACTT
genomic: AAAATGATTATGGGGAAGAAACTGCGATTGAGCCAAACGCAGAAGGGAAGgtacatgtat ... attgttgcagCCTGCATATAACAAGGATGACTTTTTTGACACAATCTCGTGCAATCAACTT
EST: gi|116389929|gb|EG432521.1|EG432521
EST:     AAAATGATTATGGGGAAGAAACTGCGATTGAGCCAAACGCAGAAGGGAAG                         CCTGCATATAACAAGGATGACTTTTTTGACACAATCTCGTGCAATCAACTT
genomic: AAAATGATTATGGGGAAGAAACTGCGATTGAGCCAAACGCAGAAGGGAAGgtacatgtat ... attgttgcagCCTGCATATAACAAGGATGACTTTTTTGACACAATCTCGTGCAATCAACTT
EST: gi|116433930|gb|EG476522.1|EG476522
EST:     AAAATGATTATGGGGAAGAAACTGCGATTGAGCCAAACGCAGAAGGGAAG                         CCTGCATATAACAAGGATGACTTTTTTGACACAATCTCGTGCAATCAACTT
genomic: AAAATGATTATGGGGAAGAAACTGCGATTGAGCCAAACGCAGAAGGGAAGgtacatgtat ... attgttgcagCCTGCATATAACAAGGATGACTTTTTTGACACAATCTCGTGCAATCAACTT
EST: gi|164059201|gb|ES199714.1|ES199714
EST:     AAAATGATTATGGGGAAG-AACTGCGATTGAGCCAAACGCAGAAGGGAAG                         CCTGCATATAACAAGGATGACTTTTTTGACACAATC
genomic: AAAATGATTATGGGGAAGAAACTGCGATTGAGCCAAACGCAGAAGGGAAGgtacatgtat ... attgttgcagCCTGCATATAACAAGGATGACTTTTTTGACACAATC

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
CAAGAAGAGTGAACTATGGGGTTATCTTGGAAGAAATAACCAGAGGAATCAAAATGATTATGGGGAAGAAACTGCGATTGAGCCAAACGCAGAAGGGAAGgtacatgtattttctaagtttgattaaatctcagcgagatctagttcaagctcttaacatgacatatttaatgatttatatgatatttcaaacaacggttgatatctgttttttgattgttgcag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGAAA