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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATATTCTGTATGACTCATGGTCTCCAGCAATGACAGTGAGTTCAGTCTGCATCAGCATCCTCTCAATGCTATCAAGTTCCCCCGAAAAGgtttctacatttgatctctcacactttgtattgttgtcacaaattcaaactttttgaccctgccacacaactcttactatgtcttattgtcgatgacaatatcag

Basic information

species Arabidopsis thaliana
transcript AT5G42990.1
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT5G42990.1 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: LOC_Os12g44000.1 (Oryza sativa), 5'ss of exon 5
ATATTCTGTATGACTCATGGTCTCCAGCAATGACAGTGAGTTCAGTCTGCATCAGCATCCTCTCAATGCTATCAAGTTCCCCCGAAAAGgtttctacatttgatctctcacactttgtattgt-tgtcacaaattcaaactttttgaccctgccacacaactcttactatgtcttattgtcgatgacaatatcag
|||| |||||||| || ||||| || |||||||| || ||||| ||||||||||||||  | |||||| | |||||||| || | |||||||  || || | | ||  ||| |||   ||| | | || |  |   |||   ||  |   |  |   |      ||  ||||  | ||  |              
ATATACTGTATGATTCTTGGTCACCTGCAATGACTGTCAGTTCGGTCTGCATCAGCATTTTGTCAATGTTGTCAAGTTCACCAGCAAAGgttattatatataa-ctaacacccttcccattttctttcgctgaccaaaaacattaaaaggtatcttgc------tataatgtggtgtttgcag------------

upper sequence: AT5G42990.1 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: GRMZM2G018447_T01 (Zea mays), 5'ss of exon 5
ATATTCTGTATGACTCATGGTCTCCAGCAATGACAGTGAGTTCAGTCTGCATCAGCATCCTCTCAATGCTATCAAGTTCCCCCGAAAAGgtttctacatttgatctctcacactttgtattgttgtcacaaattcaaactttttgaccctgccacacaactcttactatgtcttattgtcgatgacaatatcag
||||| |||||||||| ||||||||||| ||||| ||||| || ||||| ||||| ||||| || ||| | || ||||| || | ||||||     | |||  |||  |  |||      |  | | | ||  |||       |||| |    |    ||||| ||||  |   | ||    ||          
ATATTTTGTATGACTCGTGGTCTCCAGCGATGACCGTGAGCTCTGTCTGTATCAGTATCCTGTCTATGTTGTCTAGTTCGCCAGCAAAGgta---gcgtttagtcttactaactactcgat-ctattaaaacctcag-tgccctgactccataatcagactctaactagctaacaatgcatttgttgcag----

upper sequence: AT5G42990.1 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: GRMZM2G007381_T01 (Zea mays), 5'ss of exon 5
ATATTCTGTATGACTCATGGTCTCCAGCAATGACAGTGAGTTCAGTCTGCATCAGCATCCTCTCAATGCTATCAAGTTCCCCCGAAAAGgtttctacatttgatctctcacactttgtattgttgtcacaaattcaaactttttgaccctgccacacaactcttactatgtcttat-tgtcgatgacaatatcag
|||||||||||||||| ||||| ||||| ||||| ||||| || ||||| ||||| ||||| || ||| | || ||||| || | ||||||    ||| ||  ||  ||| |||   |  | |  |||  ||         | | || |     |   ||||| ||||  |   || | | | |  ||       
ATATTCTGTATGACTCGTGGTCACCAGCGATGACCGTGAGCTCTGTCTGTATCAGTATCCTGTCTATGTTGTCTAGTTCGCCAGCAAAGgtg---acacttagtca-tcatactacttgatctattca--aacctcggtgctctcactccatagccagactctaactagctagaatgtattgtttgcag------

upper sequence: AT5G42990.1 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: GRMZM2G018447_T02 (Zea mays), 5'ss of exon 5
ATATTCTGTATGACTCATGGTCTCCAGCAATGACAGTGAGTTCAGTCTGCATCAGCATCCTCTCAATGCTATCAAGTTCCCCCGAAAAGgtttctacatttgatctctcacactttgtattgttgtcacaaattcaaactttttgaccctgccacacaactcttactatgtcttattg--tcgatgacaatatcag----
||||| |||||||||| ||||||||||| ||||| ||||| || ||||| ||||| ||||| || ||| | || ||||| || | ||||||     | |||  |||  |  |||      |  | | | ||  |||       |||| |    |    ||||| ||||  |   | ||  |   |  ||  | |      
ATATTTTGTATGACTCGTGGTCTCCAGCGATGACCGTGAGCTCTGTCTGTATCAGTATCCTGTCTATGTTGTCTAGTTCGCCAGCAAAGgta---gcgtttagtcttactaactactcgat-ctattaaaacctcag-tgccctgactccataatcagactctaactagctaacaatgcatttgttgcagcaacgtccag

upper sequence: AT5G42990.1 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: GLYMA11G07810.2 (Glycine max), 5'ss of exon 5
ATATTCTGTATGACTCATGGTCTCCAGCAATGACAGTGAGTTCAGTCTGCATCAGCATCCTCTCAATGCTATCAAGTTCCCCCGAAAAGgtttctacatttgatctctcacactttgtattgttgtcacaaattcaaactttt--tgaccctgccacacaactcttactatgtcttattgtcgatgacaatatcag
||||  ||||||| ||||||||||| || |||||||| |||||  |||||||||| || ||||||||||| ||||| ||  ||  |||||| |  |  |||   |  | | |  ||||||| |  | |    ||      | |  ||    | |   || |        |||   |||| |  |  |   |     
ATATATTGTATGATTCATGGTCTCCGGCGATGACAGTTAGTTCTATCTGCATCAGTATTCTCTCAATGCTTTCAAGCTCAACCACAAAGGTgtgaatttttttaccatga-atcttgtattttcctaattccttttgtgctatgatgggattactggaccatataggacatgctatatttttaaccaaggtg----

upper sequence: AT5G42990.1 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: GLYMA11G07810.1 (Glycine max), 5'ss of exon 5
ATATTCTGTATGACTCATGGTCTCCAGCAATGACAGTGAGTTCAGTCTGCATCAGCATCCTCTCAATGCTATCAAGTTCCCCCGAAAAGgtttctacatttgatctctcacactttgtattgttgtcacaaattcaaactttt--tgaccctgccacacaactcttactatgtcttattgtcgatgacaatatcag
||||  ||||||| ||||||||||| || |||||||| |||||  |||||||||| || ||||||||||| ||||| ||  ||  |||||| |  |  |||   |  | | |  ||||||| |  | |    ||      | |  ||    | |   || |        |||   |||| |  |  |         
ATATATTGTATGATTCATGGTCTCCGGCGATGACAGTTAGTTCTATCTGCATCAGTATTCTCTCAATGCTTTCAAGCTCAACCACAAAGgtgtgaatttttttaccatga-atcttgtattttcctaattccttttgtgctatgatgggattactggaccatataggacatgctatatttttaaccaagg------

upper sequence: AT5G42990.1 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: GLYMA01G37480.1 (Glycine max), 5'ss of exon 5
ATATTCTGTATGACTCATGGTCTCCAGCAATGACAGTGAGTTCAGTCTGCATCAGCATCCTCTCAATGCTATCAAGTTCCCCCGAAAAGgtttctacatttgatctctcacactttgtattgttgtcacaaattcaaactttt--tgaccctgccacacaactcttactatgtcttattgtcgatgacaatatcag
||||  ||||||| |||||||| || || |||||||| |||||  |||||||||| || ||||||||||| ||||| ||  ||  ||||||    |  | | | |  | | |  ||||||| |  | |    ||      | |  | |   | |   || |        |||   |||| |  |  |         
ATATATTGTATGATTCATGGTCCCCTGCGATGACAGTTAGTTCTATCTGCATCAGTATTCTCTCAATGCTTTCAAGCTCAACCACAAAGgtgagaatttattaaccatga-atcttgtattttcctaattccttttgtgctatgataagattactggaccatataggacatgctatatttttaaccaagg------

upper sequence: AT5G42990.1 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: PP1S211_21V6.1 (Physcomitrella patens), 5'ss of exon 5
ATATTCTGTATGACTCATGGTCTCCAGCAATGACAGTGAGTTCAGTCTGCATCAGCATCCTCTCAATGCTATCAAGTTCCCCCGAAAAGgtttctacatttgatctctcacactttgtattgt-tgtcacaaattcaaactttttgaccctgccac----acaactcttactatgtcttattgtcgatgacaatatcag
||||||| |||||||| ||||| ||||||||||| ||||||||  |||||||||||||||| || ||| | || |||||  | |  |||||   |   ||  |  |  ||||||          | |   |  ||||   | |   |       |     ||   ||||    |||| |  | || |            
ATATTCTTTATGACTCTTGGTCACCAGCAATGACCGTGAGTTCTATCTGCATCAGCATCCTGTCCATGTTGTCTAGTTCAACTGTGAAGgtactt--tttaaagtttccacactagcctccacgtattgaattttcagtatatcgcatgtaaaaatggggactgttcttttagtgtcctgctttctaactt--------

upper sequence: AT5G42990.1 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: PP1S193_49V6.1 (Physcomitrella patens), 5'ss of exon 5
ATATTCTGTATGACTCATGGTCTCCAGCAATGACAGTGAGTTCAGTCTGCATCAGCATCCTCTCAATGCTATCAAGTTCCCCCGAAAAGgtttc---tacatttgatctc--tcacactttgtattgttgtcacaaattcaaactttttgaccctgccacacaactcttactatgtcttattgtcgatgacaatatcag
||||  |||||||||| ||||| ||||||||||| ||||| ||  ||||||||||||||||||| ||| |||| |||||  | |  ||||| ||   |  |  ||| ||   |||||| ||  ||  |||      ||  |||            |  | || || |||| |     || || |  |||   |  ||  
ATATATTGTATGACTCTTGGTCACCAGCAATGACTGTGAGCTCCATCTGCATCAGCATCCTCTCTATGTTATCTAGTTCAACAGTGAAGgtatcctgttaacctgaacttgttcacacgtttaatctttg-----gatagaaaagcgcgagtaaagaaatactacacttaatg-acattgtttt--atgttgacttc--

upper sequence: AT5G42990.1 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: EFJ27071 (Selaginella moellendorffii), 5'ss of exon 5
ATATTCTGTATGACTCATGGTCTCCAGCAATGACAGTGAGTTCAGTCTGCATCAGCATCCTCTCAATGCTATCAAGTTCCCCCGAAAAGgtttctac--atttgatctctcacactttgtattgttgtcacaaattcaaactttttgaccctgccacacaactcttactatgtcttattgtcgatgacaatatcag
||||||| ||||| || ||||| ||||| ||||| || || ||  ||||||||||||||||||| ||||| || || ||| | |  ||||||||||   | ||| |  ||  |     | ||  |  || || || |      ||||| || |                                           
ATATTCTCTATGATTCGTGGTCGCCAGCCATGACCGTCAGCTCCATCTGCATCAGCATCCTCTCGATGCTCTCGAGCTCCACAGTCAAGgtttctagtaacttgtttccttccctcgcgcatc-tcatctcacatccg----ctttgatccag-------------------------------------------

upper sequence: AT5G42990.1 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: EFJ21480 (Selaginella moellendorffii), 5'ss of exon 5
ATATTCTGTATGACTCATGGTCTCCAGCAATGACAGTGAGTTCAGTCTGCATCAGCATCCTCTCAATGCTATCAAGTTCCCCCGAAAAGgtttctac--atttgatctctcacactttgtattgttgtcacaaattcaaactttttgaccctgccacacaactcttactatgtcttattgtcgatgacaatatcag
||||||| ||||| || ||||| ||||| ||||| || || ||  ||||||||||||||||||| ||||| || || ||| | |  ||||||||||     ||| |  ||        | ||  |  || || || |      ||||| || |                                           
ATATTCTCTATGATTCGTGGTCGCCAGCCATGACCGTCAGCTCCATCTGCATCAGCATCCTCTCGATGCTCTCGAGCTCCACAGTCAAGgtttctagtagcttgtttccttctcgcgcgcatc-tcatctcacatccg----ctttgatccag-------------------------------------------