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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATCGGATGTATTAGGCCAGTTTATGCCTTTGGTTGGTATAGATTGGTCACAAACAGGTGTTACACATTTGTTTTCGGCTGTAAAGgtctgttatctgtgctttacttgttcgtaattcgtatcattatgaatgatactagcatcaaaacaacttgacaaaaagcaaagattcattttctcccttacatttgtacag

Basic information

species Arabidopsis thaliana
transcript AT5G42870.2
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT5G42870.2 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: GLYMA06G04230.1 (Glycine max), 5'ss of exon 11
ATCGGATGTATTAGGCCAGTTTATGCCTTTGGTTGGTATAGATTGGTCACAAACAGGTGTTACACATTTGTTTTCGGCTGTAAAGgtctg-ttatctgtgctttacttgttcgtaattcgt-atcattatga-atgatactagcatcaaaacaacttgacaaaaagcaaagattcattttctcccttacatttgtacag
 || |||||  | || ||||| ||||||||||||||||| || |||||||| ||||||||| ||||||| || || ||  | ||||| || ||||||   | ||   | |   |  || |  |    ||  | |||||| |    | ||| |  ||   || | |   |  || ||   | |   |||           
GTCAGATGTTCTTGGTCAGTTCATGCCTTTGGTTGGTATTGACTGGTCACAGACAGGTGTTGCACATTTATTCTCCGCAATCAAGgtttgcttatcttgtccttgagtttagatgttttgagactgctacaatatgataatgtggttaaatc--ctctgcatacactgatcatacaccat-tgtttta-----------

upper sequence: AT5G42870.2 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: GLYMA04G04060.1 (Glycine max), 5'ss of exon 10
ATCGGATGTATTAGGCCAGTTTATGCCTTTGGTTGGTATAGATTGGTCACAAACAGGTGTTACACATTTGTTTTCGGCTGTAAAGgtctgttatctgtgctttacttgttcgtaattcgt-atcattatga-atgatactagcatcaaaacaacttgacaaaaagcaaagattcattttctcccttacatttgtacag
 || |||||  | || ||||| ||||||||||||||||| || |||||||| ||||||||| ||||||| || || ||| | ||||| || |     ||   |  || |   |  || |  |    ||  | |||||| |    | ||| |  ||  | | |  |  |  || |||  |  |   |            
GTCAGATGTTCTTGGTCAGTTCATGCCTTTGGTTGGTATTGACTGGTCACAGACAGGTGTTGCACATTTATTCTCCGCTATCAAGgtttgcttatcttgtccttgttttagatgttttgagactgctacaatatgataatgtggttaaatcctctgaatacactg--atcatacatcattgcatatg-----------

upper sequence: AT5G42870.2 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: Vv18s0001g10680.t01 (Vitis vinifera), 5'ss of exon 7
ATCGGATGTATTAGGCCAGTTTATGCCTTTGGTTGGTATAGATTGGTCACAAACAGGTGTTACACATTTGTTTTCGGCTGTAAAGgtctgttatctgtgctt-tacttgttcgtaattcgtatcattat-gaatgatactagcatcaaaacaacttgacaaaaagcaaagattcattttctcccttacatttgtacag
 || |||||  |||| ||||| |||||| |||||||  ||||||||||||| ||||||||  ||||| | ||||| ||| | ||||| |||| | | | ||  ||  |  |  ||||| | |  ||| |  ||| ||  |     |  ||  |  |     | |    | |||   ||  |   |             
GTCAGATGTTCTAGGGCAGTTCATGCCTATGGTTGGAGTAGATTGGTCACAGACAGGTGTAGCACATCTATTTTCTGCTATTAAGgtttgttgtgtttcctcatatgttcttataattaggaaaattttcaaatcatgtttatcacttaaggaagtattttatattgcaaatttccttctttagt-------------