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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCAATGCCGGTATTTGATATGATGGAGACTTTATTGGTCAAGAAGCTAAATTTCAGACCAACCACAACTCTTCGGTTCTTTGTCCGTAATTTCTACGTTGgtaagaaaatttattgaaattcacgtttattatttacttatgtatatttacatttttaaggtgttagttgttcaaaaaatctgatgatgagtttttttgtcatcttaattatggttttgtag

Basic information

species Arabidopsis thaliana
transcript AT5G40780.2
intron # 5
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86077998|gb|DR373755.1|DR373755
EST:     CCGTAATTTCTACGTTG                         CTGCAACTATGTTTGTTGGTATGACGTTTCC-TTCTTCGGTGGGCTTTTGG
genomic: CCGTAATTTCTACGTTGgtaagaaaat ... ggttttgtagCTGCAACTATGTTTGTTGGTATGACGTTTCCGTTCTTCGGTGGGCTTTTGG
EST: gi|164184953|gb|ES091111.1|ES091111
EST:     TTTCAGACCAACCACAACTCTTCGGTTCTTTGTGCGTAATTTCTACGTTG                         CTGCAACTATGTTTGTTGGTATGACGTTTCCGTTCTTCGGTGGGCTT
genomic: TTTCAGACCAACCACAACTCTTCGGTTCTTTGTCCGTAATTTCTACGTTGgtaagaaaat ... ggttttgtagCTGCAACTATGTTTGTTGGTATGACGTTTCCGTTCTTCGGTGGGCTT
EST: gi|86086870|gb|DR382629.1|DR382629
EST:     TTTCAGACCAACCMCAACTCTTCGGTTYTTTGTCCGTAATTTYTACGTTG                         CTGCAACTATGTTTGTTGGTAWGACGTTTCCGTTYTTCGGTGGGCTTTTGG
genomic: TTTCAGACCAACCACAACTCTTCGGTTCTTTGTCCGTAATTTCTACGTTGgtaagaaaat ... ggttttgtagCTGCAACTATGTTTGTTGGTATGACGTTTCCGTTCTTCGGTGGGCTTTTGG
EST: gi|164172856|gb|ES037679.1|ES037679
EST:     TTTCAGACCAACCACAACTCTTCGGTTCTTTGTGCGTAATTTCTACGTTG                         CTGCAACTATGTTTGTTGGTATGACGTTTCCGTTCTTCGGTGGGCTT
genomic: TTTCAGACCAACCACAACTCTTCGGTTCTTTGTCCGTAATTTCTACGTTGgtaagaaaat ... ggttttgtagCTGCAACTATGTTTGTTGGTATGACGTTTCCGTTCTTCGGTGGGCTT
EST: gi|124889119|gb|EH968021.1|EH968021
EST:     TTTCAGACCAACCACGACTCTTCGGTTCTTTGTCCGTAATTTCTACGTTG                         CTGCAACTATGTTTGTTGGTATGACGTTTCCGTTCTTCGGTGGGCTTTTGG
genomic: TTTCAGACCAACCACAACTCTTCGGTTCTTTGTCCGTAATTTCTACGTTGgtaagaaaat ... ggttttgtagCTGCAACTATGTTTGTTGGTATGACGTTTCCGTTCTTCGGTGGGCTTTTGG