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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTGCTGCAAGAGTTACTGCAGAGAGTGCTGATAAGGATGAATGGTTTGTGGTTAAAGTTATTCACTTCGATAGAGAAACAAAAGAgtaagccttcgaacctttcttctgtatgatgttatgcctaatttttgaatatcacacaaatgcatatctgatagtttagtagctgaaacttatttgttgctgccaacacacacaaaagagttgtgcttgttaagtgcaaaggcttcatctatgaatctaaatatgtttaaaactttttatccag

Basic information

species Arabidopsis thaliana
transcript AT5G40550.2
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT5G40550.2 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: LOC_Os12g19350.1 (Oryza sativa), 5'ss of exon 5
GTTGCTGCAAGAGTTACTGCAGAGAGTGCTGATAAGGATGAATGGTTTGTGGTTAAAGTTATTCACTTCGATAGAGAAACAAAAGAgtaagcctt-cgaacctttcttctgtatgatgttatgcctaatttttgaatatcacacaaatgcatatctgatagtttagtagctgaaacttatttgttgctgccaacacacacaaaagagttgtgcttgttaagtgcaaaggcttcatctatgaatctaaatatgtttaaaactttttatccag
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GTTGCAGCTAAGGTCAAATCAGA---CGAAGAAAAAGATGAATGGTTTGTGGTGAAGGTGATACATTTCGATAAGGAAACAAAAGAgtatgtcttattcaccttttatctatattatatatttcttg--tatgaaaacttgctctaggggaaa---aaactttgtgcggatgagggcagttttagactatt--------------------------------------------------------------------------------