1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
TGCATACAGCTTCGCCATTGTCTTGTGGGAGCTTATCCACAACAAATTACCTTTTGAAGGCATGTCAAATCTCCAAGCCGCTTACGCTGCTGCATTCAAGgtttcattcttgattttcaagtgtttcaaccatttggttctccaaccggacaatgtttttctgattgttgtctgctttataatatttcgggttag
species | Arabidopsis thaliana |
transcript | AT5G40540.1 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: CTTTTGAAGGCATGTCAAATCTCCAAGCCGCTTACGCTGCTGCATTCAAG AACGTGAGGCCAAGCGCAGACGATTTACCAAAGGATTTAGCAATGATTGTAEST: gi|116424493|gb|EG467085.1|EG467085
genomic: CTTTTGAAGGCATGTCAAATCTCCAAGCCGCTTACGCTGCTGCATTCAAGgtttcattct ... ttcgggttagAACGTGAGGCCAAGCGCAGACGATTTACCAAAGGATTTAGCAATGATTGTA
EST: CTTTTGAAGGCATGTCAAATCTCCAAGCCGCTTACGCTGCTGCATTCAAG AACGTGAGGCCAAGCGCAGACGATTTACCAAAGGATTTAGCAATGGTTGTAEST: gi|124916781|gb|EH990655.1|EH990655
genomic: CTTTTGAAGGCATGTCAAATCTCCAAGCCGCTTACGCTGCTGCATTCAAGgtttcattct ... ttcgggttagAACGTGAGGCCAAGCGCAGACGATTTACCAAAGGATTTAGCAATGATTGTA
EST: CTTTTGAAGGCATGTCAAATCTCCAAGCCGCTTACGCTGCTGCATTCAAG AACGTGAGGCCAAGCGCAGACGATTTACCA
genomic: CTTTTGAAGGCATGTCAAATCTCCAAGCCGCTTACGCTGCTGCATTCAAGgtttcattct ... ttcgggttagAACGTGAGGCCAAGCGCAGACGATTTACCA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TGCATACAGCTTCGCCATTGTCTTGTGGGAGCTTATCCACAACAAATTACCTTTTGAAGGCATGTCAAATCTCCAAGCCGCTTACGCTGCTGCATTCAAGgtttcattcttgattttcaagtgtttcaaccatttggttctccaaccggacaatgtttttctgattgttgtctgctttataatatttcgggttag
- - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC