Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAGGCTAATCCCTGCTCACATAAGTGGCAAACCTCCTTCGTACTTCATCGTTGCTGGCTTTGTATTTACAACTGTCTCTGTTCCATATCTTCGATCTGAGgtcctttactgtctctctatctttccttactttctcgctttctctcatgcatccattcacagtttatataactatttcccattgatatgttttgcag

Basic information

species Arabidopsis thaliana
transcript AT5G40200.1
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT5G40200.1 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: GRMZM2G165969_T01 (Zea mays), 5'ss of exon 6
GAGGCTAATCCCTGCTCACATAAGTGGCAAACCTCCTTCGTACTTCATCGTTGCTGGCTTTGTATTTACAACTGTCTCTGTTCCATATCTTCGATCTGAGgtcc--tttactgtctctctatct-ttccttactttctcgctttctctcatgcatccattcacagtttatataactatttc-ccattgatatgttttgcag
 || || || || ||||| || |  || |  || || || || | ||| |||||||||||||| ||||   |||| ||||||||||||||||||||||||||    |||  | ||| |   ||| ||  |||   |   |  |    | ||  |  || | |   ||   ||  || |||      |       ||   | 
AAGACTCATTCCAGCTCATATCAAGGGAAGGCCGCCGTCATATTACATTGTTGCTGGCTTTGTTTTTATGGCTGTGTCTGTTCCATATCTTCGATCTGAGgtatgattttttttcttttcctctgttgtttaggcttaggtataaaataatcaagacagtaaatcttcccatgtctgttttattgcttgctcacttctga-

upper sequence: AT5G40200.1 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: AC212112.4_FGT002 (Zea mays), 5'ss of exon 5
GAGGCTAATCCCTGCTCACATAAGTGGCAAACCTCCTTCGTACTTCATCGTTGCTGGCTTTGTATTTACAACTGTCTCTGTTCCATATCTTCGATCTGAGgtcctttactgtctctctatctttccttactttctcgctttctctcatgcatccattcac-agtttatataactatttcccattgatatgttttgcag------
| ||||  |  | |||||  | |  ||||  || || || || | ||| |||||||||||||| ||| || || |||||||||||||||||||||| |||||   |   |  ||   |   ||||||| |  |   |  ||   | ||  ||  || ||  ||   || |   | ||     || ||||| ||||| |      
GCGGCTTGTTGCGGCTCATGTGAAGGGCAGGCCACCGTCATATTACATAGTTGCTGGCTTTGTTTTTGCAGCTATCTCTGTTCCATATCTTCGATCCGAGgtttgtacatagcttcttcattttccttgcaat---gaattaaataatcaatgaatacaagagcacatttggttgttagt-gttaatatgatttgctgcattcc

upper sequence: AT5G40200.1 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: GRMZM5G868913_T01 (Zea mays), 5'ss of exon 2
GAGGCTAATCCCTGCTCACATAAGTGGCAAACCTCCTTCGTACTTCATCGTTGCTGGCTTTGTATTTACAACTGTCTCTGTTCCATATCTTCGATCTGAGgtccttta-ctgtctctctatctttccttactttctcgctttctctcatgcatccattcacagtttatataactatttccca--ttgatatgttttgcag
 || || || || ||||| || |  || |  || || || || | ||| |||||||||||||| ||||    ||| ||||||||||||||||| ||||||||    |  |  |||     ||| |  ||    |   |  |    | |   |  || | |   |||  ||| || ||| |    ||| |   || ||   
AAGACTCATTCCAGCTCATATCAAGGGAAGGCCACCGTCATATTACATTGTTGCTGGCTTTGTTTTTATGGTTGTGTCTGTTCCATATCTTCGGTCTGAGgtatgatgtccttcttctcctctgttgtttaggttaagtatggaataaccgaggcagtaaatctttccatatctgttttcttgcttgctcacttctgact

upper sequence: AT5G40200.1 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: GLYMA05G01930.1 (Glycine max), 5'ss of exon 5
GAGGCTAATCCCTGCTCACATAAGTGGCAAACCTCCTTCGTACTTCATCGTTGCTGGCTTTGTATTTACAACTGTCTCTGTTCCATATCTTCGATCTGAGgtcctttactgtctctctatctttccttactttctcgctttctctcatgcatccattcacagttt---atataactatttcccattgatatgttttgcag----
 ||||| || || || ||||  |  ||||||||||| || || |  ||  ||||||| ||||| ||||||||||| ||||||||||||||||| || ||||||  |  ||     || | | | ||| | |  ||     |   | || |    |||    || |    | |  || |||    ||  |||  ||   |     
AAGGCTTATTCCAGCACACAGCAAGGGCAAACCTCCCTCATATTATATTATTGCTGGATTTGTTTTTACAACTGTTTCTGTTCCATATCTTCGTTCCGAGgtctgtggctaa---tccagcatccctaattccctatgcattaataattccgttatttggtgtcttaggtgttgctgtttgtt-ttactattgttaatattgat

upper sequence: AT5G40200.1 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: GLYMA17G09970.1 (Glycine max), 5'ss of exon 5
GAGGCTAATCCCTGCTCACATAAGTGGCAAACCTCCTTCGTACTTCATCGTTGCTGGCTTTGTATTTACAACTGTCTCTGTTCCATATCTTCGATCTGAGgtcctttactgtctctctatcttt---ccttactttctcgctttctctcatgcatccat-tcacagtttatataactatt--tcccattgatatgttttgcag
 ||||| || || || ||||  |  ||||| ||||| || || |  ||  ||||||| ||||| ||||||||||| || |||||||||||||| |||||||||  |  ||    |   |||  |   | ||| |   ||  ||  |      | |   | |  | |||| | | ||||||  |   |||||| ||  |     
AAGGCTTATTCCAGCACACAGCAAGGGCAAGCCTCCCTCATATTATATTATTGCTGGATTTGTTTTTACAACTGTTTCGGTTCCATATCTTCGTTCTGAGgtcagtggctaatccatcatccctaggcattaataattcagttatttggtgtcttaggtgttgctgtttgttttactattggtaatattgatctggatgt---