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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTGCGGATTTTGGACTTGCAAAAATTGCACAAGAACTGGATTTAAACACACACGTCTCAACGCGCGTAATGGGAACCTTTGGgtgtgtgtgtatgcactatttattagaacgttctttgtgtgaaaatcaactactcacagaagaactaaccgatattaactgtcaaattctcttag

Basic information

species Arabidopsis thaliana
transcript AT5G38560.1
intron # 5
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116453654|gb|EG496246.1|EG496246
EST:     GAACTGGATTTAAACACACACGTCTCAACGCGTGTAATGGGAACCTTTGG                         GTACATGGCTCCTGAATATGCAACAAGTGGAAAGCTGTCTGAAAAAGCAGA
genomic: GAACTGGATTTAAACACACACGTCTCAACGCGCGTAATGGGAACCTTTGGgtgtgtgtgt ... attctcttagGTACATGGCTCCTGAATATGCAACAAGTGGAAAGCTGTCTGAAAAAGCAGA
EST: gi|116453662|gb|EG496254.1|EG496254
EST:     GAACTGGATTTAAACACACACGTCTCAACGCGCGTAATGGGAACCTTTGG                         GTACATGGCTCCTGAATATGCAACAAGTGGAAAGCTGTCTGAAAAAGCAGA
genomic: GAACTGGATTTAAACACACACGTCTCAACGCGCGTAATGGGAACCTTTGGgtgtgtgtgt ... attctcttagGTACATGGCTCCTGAATATGCAACAAGTGGAAAGCTGTCTGAAAAAGCAGA