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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGAAAATCTGAAGAACATCTTGACAAATGTTTACGGGAACAAGGACAATGTAGATGACACCCTTGTAGAGgtattgtcattattactcactctcaatgacaaagaacaatgaaagttttattcactttttatgtgaaaatgttatgttag

Basic information

species Arabidopsis thaliana
transcript AT5G38520.1
intron # 5
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|124805243|gb|EH892700.1|EH892700
EST:     CCCTTGTAGAG                         ATCATTGCTGGACCAGCAAATACCGAAGGTGCACTAGATGCTTTTGTTTCA
genomic: CCCTTGTAGAGgtattgtcat ... gttatgttagATCATTGCTGGACCAGCAAATACCGAAGGTGCACTAGATGCTTTTGTTTCA
EST: gi|86074209|gb|DR369966.1|DR369966
EST:     TGACAAATGTTTACGGGAACAAGGACAATGTAGATGACACCCTTGTAGAG                         ATCATTGCTGGACCAGCAAATACCGAAGGTGCACTAGATGCTTTTGTTTCA
genomic: TGACAAATGTTTACGGGAACAAGGACAATGTAGATGACACCCTTGTAGAGgtattgtcat ... gttatgttagATCATTGCTGGACCAGCAAATACCGAAGGTGCACTAGATGCTTTTGTTTCA
EST: gi|124881220|gb|EH960122.1|EH960122
EST:     TTTACGGGAACAAGGACAATGTAGATGACACCCTTGTAGAG                         ATCATTGCTGGACCAGCAAATACCGAAGGTGCACTAGATGCTTTTGTTTCA
genomic: TTTACGGGAACAAGGACAATGTAGATGACACCCTTGTAGAGgtattgtcat ... gttatgttagATCATTGCTGGACCAGCAAATACCGAAGGTGCACTAGATGCTTTTGTTTCA