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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATGGCCTGGGAACTGAAGTCAATGAAGAAGGCATTGCTTTCTACAACGATCTTATTAATACACTTCTTGAAAAAGgtatttactctaattgaaatgagctttttcctcttcgtatggatggtactttgacgggatgattgctactgcag

Basic information

species Arabidopsis thaliana
transcript AT5G36890.1
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT5G36890.1 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: Vv00s0220g00070.t01 (Vitis vinifera), 5'ss of exon 4
ATGGCCTGGGAACTGAAGTCAATGAAGAAGGCATTGCTTTCTACAACGATCTTATTAATACACTTCTTGAAAAAGgtatttactctaattgaaatgagctttttcctcttcgtatggatggt-actttgacgggatgattgctactgcag
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ATGGTTTAGGAACCAAAGTCAATGATGAAGGCATTGCTTACTACAACAATCTCATTAATGCTCTTCTTGACAAGGgtatgaagttt--ttatatttga--tttccctctacatgcaacaggttacttattcagaaactttgctcctgcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86058097|gb|DR353854.1|DR353854
EST:     AGAAGGCATTGCTTTCTACAACGATCTTATTAATACACTTCTTGAAAAAG                         GTATTCAGCCGTATGTAACTCTGTACCATTGGGATCTCCCATCACATCTCC
genomic: AGAAGGCATTGCTTTCTACAACGATCTTATTAATACACTTCTTGAAAAAGgtatttactc ... gctactgcagGTATTCAGCCGTATGTAACTCTGTACCATTGGGATCTCCCATCACATCTCC
EST: gi|86058095|gb|DR353852.1|DR353852
EST:     AGAAGGCATTGCTTTCTACAACGATCTTATTAATACACTTCTTGAAAAAG                         GTATTCAGCCGTATGTAACTCTGTACCATTGGGATCTCCCATCACAT
genomic: AGAAGGCATTGCTTTCTACAACGATCTTATTAATACACTTCTTGAAAAAGgtatttactc ... gctactgcagGTATTCAGCCGTATGTAACTCTGTACCATTGGGATCTCCCATCACAT
EST: gi|125072551|gb|EL137200.1|EL137200
EST:     GAAGGCATTGCTTTCTACAACGATCTTATTAATACACTTCTTAGAAAAAG                         GTATTCAGCCGTATGTAACTCTGTA
genomic: GAAGGCATTGCTTTCTACAACGATCTTATTAATACACTTCTT-GAAAAAGgtatttactc ... gctactgcagGTATTCAGCCGTATGTAACTCTGTA