1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
TGCTAAGTCGATGAAGTTCAAGGATGGTTACATGGTTTCCTCAGGTCAGCCAACCAAGGAATACATTGATGCTGCAGTTAGGCATGTTCTTCTTAGACAGgtcagttcttcacagtggaaacctgtttcttgaatcacattctacctagtgagatcttgtgtaacctgaatctggttaatcacatgtgcag
species | Arabidopsis thaliana |
transcript | AT5G35530.1 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: CAACCAAGGAATACATTGATGCTGCAGTTAGGCATGTTCTTCTTAGACAG GGTGTGCTTGGTCTCAAGGTGAAGATCATGCTTGACTGGGACCCCAAGGGCEST: gi|47831852|gb|CK121536.1|CK121536
genomic: CAACCAAGGAATACATTGATGCTGCAGTTAGGCATGTTCTTCTTAGACAGgtcagttctt ... acatgtgcagGGTGTGCTTGGTCTCAAGGTGAAGATCATGCTTGACTGGGACCCCAAGGGC
EST: CAACCAAGGAATACATTGATGCTGCAGTTAGGCATGTTCTTCTTAGACAG GGTGTGCTTGGTCTCAAGGTGAAGATCATGCTTGACTGGGACCCCAAGGGCEST: gi|47831894|gb|CK121578.1|CK121578
genomic: CAACCAAGGAATACATTGATGCTGCAGTTAGGCATGTTCTTCTTAGACAGgtcagttctt ... acatgtgcagGGTGTGCTTGGTCTCAAGGTGAAGATCATGCTTGACTGGGACCCCAAGGGC
EST: CAACCAAGGAATACATTGATGCTGCAGTTAGGCATGTTCTTCTTAGACAG GGTGTGCTTGGTCTCAAGGTGAAGATCATGCTTGACTGGGACCCCAAGGGCEST: gi|164093985|gb|ES125819.1|ES125819
genomic: CAACCAAGGAATACATTGATGCTGCAGTTAGGCATGTTCTTCTTAGACAGgtcagttctt ... acatgtgcagGGTGTGCTTGGTCTCAAGGTGAAGATCATGCTTGACTGGGACCCCAAGGGC
EST: AGGCATGTTCTTCTTAGACAG GGTGTGCTTGGTCTCAAGGTGAAGATCATGCTTGACTEST: gi|86075910|gb|DR371667.1|DR371667
genomic: AGGCATGTTCTTCTTAGACAGgtcagttctt ... acatgtgcagGGTGTGCTTGGTCTCAAGGTGAAGATCATGCTTGACT
EST: CAACCAAGGAATACATTGATGCTGCAGTTAGGCATGTTCTTCTTAGACAG GGTGTGCTTGGTCTCAAGGTGAAGATCATGCTTGACTGGGACCCCAAGGGCEST: gi|86081922|gb|DR377681.1|DR377681
genomic: CAACCAAGGAATACATTGATGCTGCAGTTAGGCATGTTCTTCTTAGACAGgtcagttctt ... acatgtgcagGGTGTGCTTGGTCTCAAGGTGAAGATCATGCTTGACTGGGACCCCAAGGGC
EST: CAACCAAGGAATACATTGATGCTGCAGTTAGGCATGTTCTTCTTAGACAG GGTGTGCTTGGTCTCAAGGTGAAGATCATGCTTGACTGGGACCCCAAGGGCEST: gi|86081832|gb|DR377591.1|DR377591
genomic: CAACCAAGGAATACATTGATGCTGCAGTTAGGCATGTTCTTCTTAGACAGgtcagttctt ... acatgtgcagGGTGTGCTTGGTCTCAAGGTGAAGATCATGCTTGACTGGGACCCCAAGGGC
EST: CAACCAAGGAATACATTGATGCTGCAGTTAGGCATGTTCTTCTTAGACAG GGTGTGCTTGGTCTCAAGGTGAAGATCATGCTTGACTGGGACCCCAAGGGC
genomic: CAACCAAGGAATACATTGATGCTGCAGTTAGGCATGTTCTTCTTAGACAGgtcagttctt ... acatgtgcagGGTGTGCTTGGTCTCAAGGTGAAGATCATGCTTGACTGGGACCCCAAGGGC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TGCTAAGTCGATGAAGTTCAAGGATGGTTACATGGTTTCCTCAGGTCAGCCAACCAAGGAATACATTGATGCTGCAGTTAGGCATGTTCTTCTTAGACAGgtcagttcttcacagtggaaacctgtttcttgaatcacattctacctagtgagatcttgtgtaacctgaatctggttaatcacatgtgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG