1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
ATTTATTGATTTTTGGGTAAACGGGAACATGTTGATAATGGATACAACGACCCAAATCTTCAAGATACTAAAGCAGAAAGATCAGAGTTTCATTGTTAAGgttattttcttttaagatttgcatattcagtcagtcatgagagcgagtttattatattccagattcttttctttttttcatggcag
species | Arabidopsis thaliana |
transcript | AT5G28900.1 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: CCCAAATCTTCAAGATCCTAAAGCAGAAAGATCAGAGTTTCATTGTTAAG GATGATTTCAAACCACTACTTAAAGAACTGTTGGCGACGCATCCTGGCCTAEST: gi|125043088|gb|EL115357.1|EL115357
genomic: CCCAAATCTTCAAGATACTAAAGCAGAAAGATCAGAGTTTCATTGTTAAGgttattttct ... ttcatggcagGATGATTTCAAACCACTACTCAAAGAACTGTTGGCGACGCATCCTGGGCTA
EST: CCAAATACTTCAAGATACTAAAGCAGAAAGATCAGAGTTTCATTGTTAAG GATGATTTCAAACCACTAEST: gi|124800294|gb|EH889959.1|EH889959
genomic: CCAAAT-CTTCAAGATACTAAAGCAGAAAGATCAGAGTTTCATTGTTAAGgttattttct ... ttcatggcagGATGATTTCAAACCACTA
EST: TTTCATTGTTAAG GATGATTTCAAACCACTACTCAAAGAACTGTTGGCGACGCATCCTGGGCTAEST: gi|116435328|gb|EG477920.1|EG477920
genomic: TTTCATTGTTAAGgttattttct ... ttcatggcagGATGATTTCAAACCACTACTCAAAGAACTGTTGGCGACGCATCCTGGGCTA
EST: CCAAATCTTCAAGATCCTAAAGCAGAAAGATCAGAGTTTCATTGTTAAAG GATGATTTCAAACCACTACTTAAAGAACTGTTGGCGACGCATCCTGGCCCEST: gi|116435322|gb|EG477914.1|EG477914
genomic: CCAAATCTTCAAGATACTAAAGCAGAAAGATCAGAGTTTCATTGTTAA-Ggttattttct ... ttcatggcagGATGATTTCAAACCACTACTCAAAGAACTGTTGGCGACGCATCCTGGGC-
EST: AGAGTTTCATTGTTAAG GATGATTTCAAACCACTACTTAAAGAACTGTTGGCGACGCATCCTGGCCTA
genomic: AGAGTTTCATTGTTAAGgttattttct ... ttcatggcagGATGATTTCAAACCACTACTCAAAGAACTGTTGGCGACGCATCCTGGGCTA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ATTTATTGATTTTTGGGTAAACGGGAACATGTTGATAATGGATACAACGACCCAAATCTTCAAGATACTAAAGCAGAAAGATCAGAGTTTCATTGTTAAGgttattttcttttaagatttgcatattcagtcagtcatgagagcgagtttattatattccagattcttttctttttttcatggcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGATCA