1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
GGAAGGCTCAGACTTCCACTGATAGGTTTGAGATGTGGGGAGATGGGCTTCAGACCCGTTCTTTTACCTTTATCGATGAGTGTGTTGAAGGTGTACTCAGgtgagggtatctcctgatgttgatgaagttgtatgttagacgtaattggctgatattttcgtcatttttgttttatag
species | Arabidopsis thaliana |
transcript | AT5G28840.1 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: CAGACCCGTTCTTTTACCTTTATCGATGAGTGTGTTGAAGGTGTACTCAG GTTGACAAAATCAGATTTCCGTGAGCCGGTGAACATCGGAAGCGATGAGATEST: gi|116412576|gb|EG455168.1|EG455168
genomic: CAGACCCGTTCTTTTACCTTTATCGATGAGTGTGTTGAAGGTGTACTCAGgtgagggtat ... tgttttatagGTTGACAAAATCAGATTTCCGTGAGCCGGTGAACATCGGAAGCGATGAGAT
EST: CAGACCCGTTCTTTTACCTTTATCGATGAGTGTGTTGAAGGTGTACTCAG GTTGACAAAATCAGATTTCCGTGAGCCGGTGAACATCGGAAGCGATGAGATEST: gi|47830746|gb|CK120430.1|CK120430
genomic: CAGACCCGTTCTTTTACCTTTATCGATGAGTGTGTTGAAGGTGTACTCAGgtgagggtat ... tgttttatagGTTGACAAAATCAGATTTCCGTGAGCCGGTGAACATCGGAAGCGATGAGAT
EST: CAGACCCGTTCTTTTACCTTTATCGATGAGTGTGTTGAAGGTGTACTCAG GTTGACAAAATCAGATTTCCGTGAGCCGGTGAACATCGGAAGCGATGAGATEST: gi|124740031|gb|EH831193.1|EH831193
genomic: CAGACCCGTTCTTTTACCTTTATCGATGAGTGTGTTGAAGGTGTACTCAGgtgagggtat ... tgttttatagGTTGACAAAATCAGATTTCCGTGAGCCGGTGAACATCGGAAGCGATGAGAT
EST: CAGACCCGTTCTTTTACCTTTATCGATGAGTGTGTTGAAGGTGTACTCAG GTTGACAAAATCAGATEST: gi|124752728|gb|EH842858.1|EH842858
genomic: CAGACCCGTTCTTTTACCTTTATCGATGAGTGTGTTGAAGGTGTACTCAGgtgagggtat ... tgttttatagGTTGACAAAATCAGAT
EST: TATCGATGAGTGTGTTGAAGGTGTACTCAG GTTGACAAAATCAGATTTCCGTGAGCCGGTGAACATCGGAAGCGATGAGATEST: gi|86019686|gb|DR315432.1|DR315432
genomic: TATCGATGAGTGTGTTGAAGGTGTACTCAGgtgagggtat ... tgttttatagGTTGACAAAATCAGATTTCCGTGAGCCGGTGAACATCGGAAGCGATGAGAT
EST: CAGACCCGTTCTTTTACCTTTATCGATGAGTGTGTTGAAGGTGTACTCAG GTTGACAAAATCAGATTTCCGTGAGCCGGTGAACATCGGAAGCGATGAGATEST: gi|86079152|gb|DR374909.1|DR374909
genomic: CAGACCCGTTCTTTTACCTTTATCGATGAGTGTGTTGAAGGTGTACTCAGgtgagggtat ... tgttttatagGTTGACAAAATCAGATTTCCGTGAGCCGGTGAACATCGGAAGCGATGAGAT
EST: TCTTTTACCTTTATCGATGAGTGTGTTGAAGGTGTACTCAG GTTGACAAAATCAGATTTCCGTGAGCCGGTGAACATCGGAAGCGATGAGATEST: gi|86084740|gb|DR380499.1|DR380499
genomic: TCTTTTACCTTTATCGATGAGTGTGTTGAAGGTGTACTCAGgtgagggtat ... tgttttatagGTTGACAAAATCAGATTTCCGTGAGCCGGTGAACATCGGAAGCGATGAGAT
EST: CTTTATCGATGAGTGTGTTGAAGGTGTACTCAG GTTGACAAAATCAGATTTCCGTGAGCCGGTGAACATCGGAAGCGATGAGATEST: gi|125219662|gb|EL233747.1|EL233747
genomic: CTTTATCGATGAGTGTGTTGAAGGTGTACTCAGgtgagggtat ... tgttttatagGTTGACAAAATCAGATTTCCGTGAGCCGGTGAACATCGGAAGCGATGAGAT
EST: TTTACCTTTATCGATGAGTGTGTTGAAGGTGTACTCAG GTTGACAAAATCAGATTTCCGTGAGCCGGTGAACATCGGAAGCGATGAGATEST: gi|116412564|gb|EG455156.1|EG455156
genomic: TTTACCTTTATCGATGAGTGTGTTGAAGGTGTACTCAGgtgagggtat ... tgttttatagGTTGACAAAATCAGATTTCCGTGAGCCGGTGAACATCGGAAGCGATGAGAT
EST: CAGACCCGTTCTTTTACCTTTATCGATGAGTGTGTTGAAGGTGTACTCAG GTTGACAAAATCAGATTTCCGTGAGCCGGTGAACATCGGAAGCGATGAGAT
genomic: CAGACCCGTTCTTTTACCTTTATCGATGAGTGTGTTGAAGGTGTACTCAGgtgagggtat ... tgttttatagGTTGACAAAATCAGATTTCCGTGAGCCGGTGAACATCGGAAGCGATGAGAT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GGAAGGCTCAGACTTCCACTGATAGGTTTGAGATGTGGGGAGATGGGCTTCAGACCCGTTCTTTTACCTTTATCGATGAGTGTGTTGAAGGTGTACTCAGgtgagggtatctcctgatgttgatgaagttgtatgttagacgtaattggctgatattttcgtcatttttgttttatag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG