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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TAAGAAACTTAACAAAATCGAGTTATCAGAATGCGAGATTTACGCATCTTGTGAGCCATGTCCGATGTGCTTCGGAGCCATCCATCTCTCGAGACTCAAGgtaagatgtcgaaacaagtctactcacaaacccatctttctaatcatttcatttatcacaatgagtactcatgtctctacttgtaaacag

Basic information

species Arabidopsis thaliana
transcript AT5G28050.2
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT5G28050.2 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: LOC_Os07g14150.6 (Oryza sativa), 5'ss of exon 3
TAAGAAACTTAACAAAATCGAGTTATCAGAATGCGAGATTTACGCATCTTGTGAGCCATGTCCGATGTGCTTCGGAGCCATCCATCTCTCGAGACTCAAGgtaagatgtcga-aacaagtctactcacaaacccatc-----tttctaatcatttcatttatcacaatgagtactcatgtctctacttgtaaacag
 || || ||    ||||||||| | ||||| || || |||||||| |||||||||||||| || |||||||| || ||  | ||||||||  |  |||||||  |    ||  ||     |||| || || | ||||     | ||| |  |||| ||||| |||||    || |  | || ||||          
CAAAAAGCTCGGAAAAATCGAGCTCTCAGATTGTGAAATTTACGCGTCTTGTGAGCCATGCCCAATGTGCTTTGGTGCAGTTCATCTCTCCCGGATCAAGgtctgcacccgtcaattttcctacgcataacctcatcacaaatatctgacgattttatttaacacaactgctaattct-tcactacag--------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|125285631|gb|EL299716.1|EL299716
EST:     GTGAGCCATGTCCGATGTGCTTCGGAGCCATCCATCTCTCGAGACTCAAG                         AGGTTGGTTTATGGAGCCAAAGCCGAAGCAGCTATAG
genomic: GTGAGCCATGTCCGATGTGCTTCGGAGCCATCCATCTCTCGAGACTCAAGgtaagatgtc ... ttgtaaacagAGGTTGGTTTATGGAGCCAAAGCCGAAGCAGCTATAG
EST: gi|301501150|gb|HO206690.1|HO206690
EST:     GTGAGCCATGTCCGATGTGCTTCGGAGCCATCCATCTCTCGAGACTCAAG                         AGGTTGGTTTATGGAGCCAAAGCCGAAGCAGCTATAGCCATCGGGTTTGAT
genomic: GTGAGCCATGTCCGATGTGCTTCGGAGCCATCCATCTCTCGAGACTCAAGgtaagatgtc ... ttgtaaacagAGGTTGGTTTATGGAGCCAAAGCCGAAGCAGCTATAGCCATCGGGTTTGAT
EST: gi|124731090|gb|EH822492.1|EH822492
EST:     CTCTCGAGACTCAAG                         AGGTTGGTTTATGGAGCCAAAGCCGAAGCAGCTATAGCCATCGGGTTTGAT
genomic: CTCTCGAGACTCAAGgtaagatgtc ... ttgtaaacagAGGTTGGTTTATGGAGCCAAAGCCGAAGCAGCTATAGCCATCGGGTTTGAT
EST: gi|125182947|gb|EL198124.1|EL198124
EST:     CGATGTGCTTCGGAGCCATCCATCTCTCGAGACTCAAG                         AGGTTGGTTTATGGAGCCAAAGCCGAAGCAGCTATAGCCATCGGGTTTGAT
genomic: CGATGTGCTTCGGAGCCATCCATCTCTCGAGACTCAAGgtaagatgtc ... ttgtaaacagAGGTTGGTTTATGGAGCCAAAGCCGAAGCAGCTATAGCCATCGGGTTTGAT
EST: gi|301502126|gb|HO207666.1|HO207666
EST:     GTGAGCCATGTCCGATGTGCTTCGGAGCCATCCATCTCTCGAGACTCAAG                         AGGTTGGTTTATGGAGCCAAAGCCGAAGCAGCTATAGCCATCGGGTTTGAT
genomic: GTGAGCCATGTCCGATGTGCTTCGGAGCCATCCATCTCTCGAGACTCAAGgtaagatgtc ... ttgtaaacagAGGTTGGTTTATGGAGCCAAAGCCGAAGCAGCTATAGCCATCGGGTTTGAT
EST: gi|124933634|gb|EL010775.1|EL010775
EST:     GTGAGCCATGTCCGATGTGCTTCGGAGCCATCCATCTCTCGAGACTCAAG                         AGGTTGGTTTATGG
genomic: GTGAGCCATGTCCGATGTGCTTCGGAGCCATCCATCTCTCGAGACTCAAGgtaagatgtc ... ttgtaaacagAGGTTGGTTTATGG